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gosim
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2.0k
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GOSim yeast
GO
Yeast
GOSim
GO
Yeast
GOSim
updated 7.1 years ago by
solis
• 0 • written 11.9 years ago by
Guest User
★ 13k
0
votes
1
reply
1.4k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim
gosemsim
updated 7.1 years ago by
Lluís Revilla Sancho
▴ 730 • written 8.6 years ago by
s.apocarpum
▴ 10
0
votes
2
replies
1.3k
views
Simple GO pie and GOSim install error
GO
Organism
biomaRt
GOSim
GO
Organism
biomaRt
GOSim
updated 12.7 years ago by
Olivier Lucas
▴ 40 • written 12.7 years ago by
Marc Carlson
★ 7.2k
0
votes
3
replies
1.2k
views
Query Gene Ontology
GOSim
GOSim
updated 12.9 years ago by
Wolfgang Huber
★ 13k • written 12.9 years ago by
LEMAITRE Hervé Université Paris Sud
▴ 10
0
votes
1
reply
1.2k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
updated 14.6 years ago by
Marc Carlson
★ 7.2k • written 14.6 years ago by
Gang Chen
▴ 20
0
votes
0
replies
1.2k
views
Simple GO pie and GOSim install error
GO
Organism
biomaRt
GOSim
GO
Organism
biomaRt
GOSim
12.7 years ago
Olivier Lucas
▴ 40
0
votes
0
replies
985
views
GOSim Problem
Yeast
Organism
GOSim
Yeast
Organism
GOSim
11.6 years ago
Pablo Andretta Jaskowiak
▴ 10
0
votes
0
replies
826
views
Problem while working with GOSim package
GOSim
GOSim
11.7 years ago
ANIRBAN BHAR
▴ 60
3
votes
3
replies
819
views
compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 5.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 5.5 years ago by
monifass
▴ 10
0
votes
1
reply
675
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 18 months ago by
Basti
▴ 780 • written 18 months ago by
yeluo
• 0
1
vote
1
reply
629
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim
GOSemSim
updated 14 months ago by
Lluís Revilla Sancho
▴ 730 • written 14 months ago by
eliska.ochodkova
▴ 10
11 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
I am not sure how your comment helps here?
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
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A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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