Showing : gosim • reset
3
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compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 7.2 years ago by ▴ 760 • written 7.2 years ago by ▴ 10
1
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1
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1.2k
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GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 3.0 years ago by ▴ 760 • written 3.0 years ago by ▴ 10
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0
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1.5k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
14.4 years ago Olivier Lucas ▴ 40
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2
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1.7k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 14.4 years ago by ▴ 40 • written 14.4 years ago by ★ 7.2k
0
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2
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2.5k
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GOSim yeast
GO Yeast GOSim GO Yeast GOSim
updated 8.9 years ago by • 0 • written 13.7 years ago by ★ 13k
0
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1
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1.6k
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Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 16.4 years ago by ★ 7.2k • written 16.4 years ago by ▴ 20
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0
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1.3k
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GOSim Problem
Yeast Organism GOSim Yeast Organism GOSim
13.3 years ago Pablo Andretta Jaskowiak ▴ 10
0
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1
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1.9k
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Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 8.8 years ago by ▴ 760 • written 10.3 years ago by ▴ 10
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1
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1.1k
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I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 3.3 years ago by ▴ 780 • written 3.3 years ago by • 0
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0
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1.1k
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Problem while working with GOSim package
GOSim GOSim
13.4 years ago ANIRBAN BHAR ▴ 60
0
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3
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1.6k
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Query Gene Ontology
GOSim GOSim
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 10
11 results • Page 1 of 1
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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0
Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…
Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
Aaron Lun was a PhD student in my Lab back in 2015, when he posted the answers about allele-specific expression that you and Mike Love have…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
You just need the mouse identifier (controls baseline) and the group specific allelic effect.
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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