Showing : gostats • reset
0
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10
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4.1k
views
GOStat and multiple testing
GO GOstats GO GOstats
updated 19.7 years ago by ▴ 810 • written 19.7 years ago by ▴ 620
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votes
6
replies
1.4k
views
hyperGTest
GO Cancer GOstats Category GO Cancer GOstats Category
updated 17.0 years ago by ★ 6.0k • written 17.0 years ago by ★ 7.4k
0
votes
12
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2.0k
views
Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
18.2 years ago michael watson IAH-C ★ 3.4k
0
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6
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1.3k
views
serious problem with GOstats package
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 11.0 years ago by ★ 8.2k • written 11.0 years ago by ▴ 430
0
votes
5
replies
1.6k
views
Measuring similarities beween GO terms graphs
Annotation GO GOstats Annotation GO GOstats
updated 16.7 years ago by ▴ 50 • written 16.7 years ago by ▴ 500
0
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7
replies
1.4k
views
Gene Ontology relationships
Cancer GOstats Cancer GOstats
updated 16.8 years ago by ★ 1.4k • written 16.9 years ago by ★ 7.4k
0
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10
replies
1.9k
views
comparing GO lists
Annotation GO Cancer graph GOstats Annotation GO Cancer graph GOstats
updated 16.7 years ago by ▴ 130 • written 16.8 years ago by ★ 5.5k
0
votes
8
replies
1.5k
views
Help with HyperGTest
Annotation probe GOstats Annotation probe GOstats
14.5 years ago Yue, Chen - BMD ▴ 60
0
votes
6
replies
1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.4k
0
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5
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1.4k
views
GOstats : Error in getUniverseHelper - No Entrez Gene ids left in universe
GOstats GOstats
updated 14.7 years ago by ▴ 200 • written 14.7 years ago by ▴ 90
0
votes
4
replies
1.8k
views
Gene Ontology analysis for non-affy data
GO GOstats topGO GO GOstats topGO
updated 14.6 years ago by ▴ 400 • written 14.6 years ago by ▴ 50
0
votes
6
replies
2.1k
views
GOstats and KEGG
Pathways GO GOstats Pathways GO GOstats
updated 17.4 years ago by ★ 7.4k • written 17.5 years ago by ▴ 190
0
votes
11
replies
1.8k
views
GOstats and GenePix arrays
GO GOstats GO GOstats
18.0 years ago Jacob Michaelson ▴ 320
0
votes
3
replies
1.7k
views
RBGL fails to compile / install
RBGL GOstats RBGL GOstats
updated 14.3 years ago by ★ 7.4k • written 14.3 years ago by ▴ 630
0
votes
4
replies
1.3k
views
Error with Rgraphviz
GOstats GOstats
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ▴ 300
3
votes
10
replies
1.3k
views
GO Stats results contain GO terms NOT present in the gene universe
gostats
updated 5.9 years ago by • 0 • written 5.9 years ago by ▴ 20
0
votes
6
replies
1.2k
views
.pdf files of GOstats documents
GOstats GOstats
updated 19.2 years ago by ★ 3.4k • written 19.2 years ago by ▴ 720
6
votes
6
replies
3.4k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound)
Gostats go term annotation drosophila melanogaster error
updated 7.2 years ago by ▴ 10 • written 7.9 years ago by ▴ 300
0
votes
8
replies
2.0k
views
PFAM Enrichment in GOstats
PFAM Category GOstats
updated 8.9 years ago by ★ 1.2k • written 9.0 years ago by ▴ 930
1
vote
10
replies
2.3k
views
Filtering genes for GOstats
gostats
9.2 years ago nonCodingGene ▴ 10
0
votes
5
replies
1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 890
0
votes
3
replies
1.4k
views
question using GSEABase
GO GOstats topGO GSEABase GO GOstats topGO GSEABase
updated 14.9 years ago by 25k • written 14.9 years ago by ▴ 80
0
votes
12
replies
2.2k
views
new package for generating interactive HTML reports
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
updated 11.3 years ago by ★ 1.6k • written 11.3 years ago by ▴ 20
0
votes
14
replies
2.4k
views
GOStats/RBGL installation error
RBGL GOstats RBGL GOstats
updated 16.5 years ago by ▴ 170 • written 16.5 years ago by ▴ 260
0
votes
5
replies
2.0k
views
GOstats, geneCounts and gene universe filtering...
GO rat2302 probe GOstats topGO GO rat2302 probe GOstats topGO
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 110
0
votes
5
replies
1.6k
views
AnnBuilder with custmerized GO annotation
Annotation GO GOstats Annotation GO GOstats
updated 17.0 years ago by ▴ 870 • written 17.0 years ago by ▴ 120
0
votes
4
replies
1.2k
views
GOstats locked database
GO Cancer GOstats GO Cancer GOstats
16.3 years ago Janet Young ▴ 740
0
votes
3
replies
2.6k
views
GOStats: summary hyperGTest, count and size
Annotation GO Organism GOstats Annotation GO Organism GOstats
10.1 years ago Christine Gläßer ▴ 60
0
votes
4
replies
1.2k
views
Gostats with Yeast annotation
Annotation GO Yeast GOstats Annotation GO Yeast GOstats
updated 15.8 years ago by ★ 7.2k • written 15.8 years ago by ▴ 650
0
votes
4
replies
1.1k
views
Incomplete EntrezID annotations for the Mouse 430 v2.0 probe-set
Annotation GO affy GOstats Annotation GO affy GOstats
updated 13.5 years ago by 6.7k • written 13.5 years ago by ▴ 110
0
votes
2
replies
1.1k
views
(no subject)
GO GOstats GO GOstats
updated 19.8 years ago by ▴ 10 • written 19.8 years ago by ▴ 300
0
votes
3
replies
1.9k
views
Can not install 'affyio' with compiler icc on redhat linux ES5
GOstats GOstats
updated 7.8 years ago by ▴ 10 • written 13.4 years ago by ▴ 10
0
votes
7
replies
1.4k
views
no summary of GOHyperGResult
GO GOstats Category GO GOstats Category
updated 13.8 years ago by 25k • written 13.8 years ago by ▴ 280
0
votes
8
replies
2.0k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 13.1 years ago by ▴ 930 • written 13.1 years ago by ▴ 860
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votes
2
replies
1.2k
views
GO.db and Gostats question
Annotation GO PROcess GOstats Annotation GO PROcess GOstats
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 570
0
votes
2
replies
997
views
annotation for illumina mouse-6 arrays? & GOstats
Annotation GO GOstats Annotation GO GOstats
updated 14.6 years ago by ★ 1.1k • written 14.6 years ago by ▴ 50
0
votes
2
replies
1.6k
views
Bioconductor Digest, Vol 82, Issue 20
Annotation Pathways affy GOstats Category AnnotationDbi Annotation Pathways affy GOstats
updated 14.3 years ago by ▴ 70 • written 14.3 years ago by ▴ 60
0
votes
5
replies
2.2k
views
GOstats problem with output
Annotation GO GOstats Annotation GO GOstats
updated 13.1 years ago by ★ 7.2k • written 13.1 years ago by ★ 1.5k
0
votes
2
replies
1.2k
views
KEGG.db in GoStats with Streptomyces coelicolor
Microarray Annotation GOstats Microarray Annotation GOstats
updated 15.4 years ago by ★ 7.2k • written 15.4 years ago by ▴ 20
0
votes
9
replies
1.4k
views
Rgraphviz for Windows
Rgraphviz GOstats Rgraphviz GOstats
updated 19.7 years ago by ★ 3.9k • written 19.7 years ago by ▴ 20
0
votes
8
replies
1.8k
views
Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)
GO GOstats biomaRt GO GOstats biomaRt
updated 15.6 years ago by ★ 5.5k • written 15.6 years ago by ▴ 270
0
votes
3
replies
1.4k
views
Gostats with Yeast annotation
Microarray Annotation GO Cancer Yeast GOstats Microarray Annotation GO Cancer Yeast
15.2 years ago Yolande Tra ▴ 160
0
votes
2
replies
986
views
GOstats and library ath1121501
ath1121501 hgu95av2 GOstats ath1121501 hgu95av2 GOstats
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 70
0
votes
2
replies
1.6k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
17.2 years ago Mark W Kimpel ▴ 830
0
votes
4
replies
1.5k
views
RBGL installation issues
RBGL GOstats RBGL GOstats
updated 15.6 years ago by ▴ 510 • written 15.6 years ago by ▴ 930
0
votes
2
replies
880
views
GOstats gene set size selection
GO GOstats GO GOstats
updated 16.0 years ago by ★ 5.5k • written 16.0 years ago by ▴ 30
0
votes
3
replies
2.0k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 80
0
votes
4
replies
1.1k
views
lumiHumanAll.db, GOstats
Clustering GOstats Clustering GOstats
updated 15.9 years ago by ★ 3.6k • written 15.9 years ago by ▴ 270
0
votes
2
replies
1.1k
views
where can I find the GO and xtable package?
GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph
updated 19.7 years ago by ★ 5.5k • written 19.7 years ago by ▴ 320
0
votes
2
replies
1.0k
views
error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 10
50 results • Page 1 of 1
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Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp by clacarion • 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp by clacarion • 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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