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gothic
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from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
mictadlo
▴ 10
0
votes
1
reply
877
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
5.3 years ago
mictadlo
▴ 10
0
votes
3
replies
959
views
GOTHiC's GOTHiC's function fails with bwa input
GOTHiC
5.5 years ago
alongalor
▴ 10
0
votes
0
replies
784
views
GOTHiC odd output
gothic
7.8 years ago
manduchi
▴ 10
0
votes
3
replies
1.6k
views
GOTHiC hg19 error
GOTHiC
hic
8.5 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
2.4k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.6 years ago • updated 8.5 years ago
Bogdan
▴ 670
0
votes
1
reply
3.6k
views
Error in FUN(X[[i]], ...) : subscript out of bounds
bioconductor
gothic
R
updated 8.8 years ago by
Vicky_Tche
• 0 • written 8.8 years ago by
sv380
• 0
0
votes
0
replies
1.1k
views
GOTHiC seqlevel bug
GOTHiC
software error
8.9 years ago
bef22
• 0
8 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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