Bioconductor Gothic

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HiTC gothic diffhic HiC

7.7 years ago Bogdan ▴ 660

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bioconductor gothic R

updated 8.0 years ago by Vicky_Tche • 0 • written 8.0 years ago by sv380 • 0

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hic diffhic gothic hicup hic-c

4.5 years ago mictadlo ▴ 10

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diffhic gothic hicup hic-c hic

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.5 years ago by mictadlo ▴ 10

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GOTHiC hic

7.7 years ago Nathan Sheffield ▴ 10

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gothic

7.0 years ago manduchi ▴ 10

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GOTHiC software error

8.1 years ago bef22 • 0

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690

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GOTHiC

4.6 years ago alongalor ▴ 10

8 results • Page 1 of 1

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Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

Sure, noted.

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …

Comment: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k

PS. Just as aside, using `dput` to show a data.frame is unnecessary overkill. Just typing `targetsframe` at the prompt would do the job.

Comment: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k

> Basically, I want to create a design matrix and binarize by 0 and 1 to be used in WGCNA analysis to compare module between/within groups …

Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl by ansleyharralson • 0

Any estimate on when DelayedArray 0.26.3 will be released for macOS Binary (arm64)? Latest is still 0.26.02 best I can tell.

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WGCNA coupled with differential expression analysis: question about baseline module detection

WGCNA with paired samples

Comment: Question on constructing design matrix and defining contrasts for analysis

Answer: Question on constructing design matrix and defining contrasts for analysis

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Teacher to James W. MacDonald 63k