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updated 6.6 years ago by
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Comment: How to use subjunc for differential splicing analysis?
by
Assa Yeroslaviz
★
1.5k
thanks again.
so How do I get the exon counts?
This is the command I use now?
```
subjunc -T 10 -i $subjuncIndex/Cel.WBcel235 -r $rawdat…
Answer: How to use subjunc for differential splicing analysis?
by
Gordon Smyth
44k
If you want to do test for differential gene expression, then you need gene counts.
If you want to test for differential exon usage (aka d…
Comment: catchKallisto results are not counts
by
Assa Yeroslaviz
★
1.5k
thanks for the fast response
Answer: catchKallisto results are not counts
by
Gordon Smyth
44k
They are estimated counts from kallisto's EM algorithm. Columns sum to the total number of mapped reads for that sample.
edgeR accepts fra…
Answer: Trying to follow a gene set analyisis in R
by
leonardorosas2001
•
0
e$condition stands for an expression set that comes from the data in GEO. It was created to store the data in e$characteristics_ch1.2. If I…
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