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gothic
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from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 4.2 years ago by
Aaron Lun
★ 28k • written 4.2 years ago by
mictadlo
▴ 10
0
votes
1
reply
521
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
4.2 years ago
mictadlo
▴ 10
0
votes
3
replies
604
views
GOTHiC's GOTHiC's function fails with bwa input
GOTHiC
4.3 years ago
alongalor
▴ 10
0
votes
0
replies
593
views
GOTHiC odd output
gothic
6.6 years ago
manduchi
▴ 10
0
votes
3
replies
1.3k
views
GOTHiC hg19 error
GOTHiC
hic
7.4 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
1.6k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
7.4 years ago
Bogdan
▴ 660
0
votes
1
reply
3.3k
views
Error in FUN(X[[i]], ...) : subscript out of bounds
bioconductor
gothic
R
updated 7.6 years ago by
Vicky_Tche
• 0 • written 7.7 years ago by
sv380
• 0
0
votes
0
replies
854
views
GOTHiC seqlevel bug
GOTHiC
software error
7.8 years ago
bef22
• 0
8 results • Page
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Comment: TCGA: clinical data and expression data
by
sharifnstu1203002m
• 0
Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Jonathan Göke
▴ 40
Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
by
Gordon Smyth
47k
Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user)
by
lalanis1
• 0
Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani
Comment: Nested paired design with covariates in limma
by
Gordon Smyth
47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
Votes
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
Comment: Question about GWASTools gdsSubset
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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