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gothic
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4
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20
replies
2.4k
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scaling loess curves
HiTC
gothic
diffhic
HiC
8.6 years ago
Bogdan
▴ 670
0
votes
1
reply
3.7k
views
Error in FUN(X[[i]], ...) : subscript out of bounds
bioconductor
gothic
R
updated 8.9 years ago by
Vicky_Tche
• 0 • written 8.9 years ago by
sv380
• 0
0
votes
1
reply
898
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
5.4 years ago
mictadlo
▴ 10
0
votes
9
replies
1.5k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
mictadlo
▴ 10
0
votes
3
replies
1.6k
views
GOTHiC hg19 error
GOTHiC
hic
8.6 years ago
Nathan Sheffield
▴ 10
0
votes
0
replies
796
views
GOTHiC odd output
gothic
7.9 years ago
manduchi
▴ 10
0
votes
0
replies
1.1k
views
GOTHiC seqlevel bug
GOTHiC
software error
9.0 years ago
bef22
• 0
0
votes
3
replies
981
views
GOTHiC's GOTHiC's function fails with bwa input
GOTHiC
5.5 years ago
alongalor
▴ 10
8 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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