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Showing :
grangeslist
•
reset
2
votes
4
replies
5.8k
views
rtracklayer export GRangesList as gtf and change attributes
grangeslist
rtracklayer
updated 21 months ago by
James
• 0 • written 8.7 years ago by
Jake
▴ 90
15
votes
4
replies
11k
views
How to convert a GRangesList object into a GRanges object?
genomicranges
grangeslist
granges
s4
updated 2.0 years ago by
Hervé Pagès
16k • written 7.8 years ago by
richierocks
▴ 40
2
votes
3
replies
886
views
S4Vectors, strange metadata behavior
GRangesList
S4Vectors
updated 2.4 years ago by
Hervé Pagès
16k • written 2.4 years ago by
hauken_heyken
▴ 80
4
votes
9
replies
1.5k
views
Using genomic ranges to get counts of non-overlapping (non-redundant) regions
genomicranges
granges
grangeslist
R
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
new_user6
• 0
8
votes
8
replies
8.0k
views
How to remove out of bound rows from granges
Granges
grangeslist
updated 4.7 years ago by
balwierz
▴ 40 • written 8.5 years ago by
vinod.acear
▴ 50
1
vote
1
reply
909
views
How to make combined annotation of 5'UTRs and CDS's?
annotation
concatenation
GRangesList
GenomicRanges
5.0 years ago
anmej
• 0
6
votes
12
replies
1.8k
views
mclapply to loop over a GRangesList object
GenomicRanges
GRanges
GRangesList
parallel
mclapply
5.1 years ago
foehn
▴ 100
7
votes
5
replies
3.8k
views
summarize scores of GRanges into bins
genomicranges
grangeslist
bin
findoverlaps
updated 5.4 years ago by
Jenny HT Lee
• 0 • written 6.6 years ago by
Assa Yeroslaviz
★ 1.5k
3
votes
6
replies
2.5k
views
New Version of R cannot coerce "GRanges" to "RangesList"
grangeslist
irangeslist
updated 5.7 years ago by
Hervé Pagès
16k • written 5.9 years ago by
hicklingmeb
▴ 10
0
votes
1
reply
829
views
pintersect using GRangeslist
grangeslist
5.7 years ago
rmortenson7
• 0
1
vote
6
replies
1.5k
views
deconvole counts per feature from summerizedOverlaps with GRangesLists
summarizeoverlaps
rangedsummarizedexperiment
grangeslist
summarizedexperiment
6.0 years ago
cosmin
• 0
2
votes
7
replies
1.7k
views
Splitting lines of a GRanges object based on character list
granges
grangeslist
updated 6.1 years ago by
Michael Lawrence
★ 11k • written 6.1 years ago by
stephen.williams
▴ 10
0
votes
2
replies
996
views
issue retrieving metadata after psetdiff function
grangeslist
granges
6.2 years ago
andreag1987
• 0
6
votes
4
replies
1.9k
views
unlist a exons GRangeslist object and add a gene name column
granges
grangeslist
txdb.hsapiens.ucsc.hg19.knowngene
updated 6.4 years ago by
Hervé Pagès
16k • written 6.4 years ago by
tangming2005
▴ 190
3
votes
6
replies
1.4k
views
Accessing GRangesList rows in Rcpp
Rcpp
GRangesList
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
hauken_heyken
▴ 80
2
votes
5
replies
1.2k
views
Weaknesses with GRanges data type, or just me ?
GRangeslist
GRanges
makeGrangesFromDataFrame
updated 6.4 years ago by
Michael Lawrence
★ 11k • written 6.4 years ago by
hauken_heyken
▴ 80
6
votes
6
replies
5.9k
views
converting a GRangesList object with different lengths into a data frame
genomicranges
grangeslist
dataframe
irangeslist
lists
updated 6.5 years ago by
Michael Lawrence
★ 11k • written 6.5 years ago by
Assa Yeroslaviz
★ 1.5k
3
votes
15
replies
2.9k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
1
reply
911
views
Width in IRanges objects on "+" and "-" strand
iranges
granges
grangeslist
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
Walter F. Baumann
▴ 10
0
votes
1
reply
1.0k
views
qCount with a GRangesList is very slow
QuasR
qCount
GRangesList
6.7 years ago
vakul.mohanty
▴ 10
0
votes
10
replies
2.0k
views
behaviour of findOverlaps on GRangesList object
findOverlaps
grangeslist
GenomicRanges
6.8 years ago
lovro0
▴ 10
3
votes
1
reply
1.8k
views
Extracting Coordinates of startcodon from Grangeslist
biomart
bioconductor
grangeslist
cds
ribosome profiling
updated 6.8 years ago by
Hervé Pagès
16k • written 6.8 years ago by
Walter F. Baumann
▴ 10
0
votes
1
reply
865
views
intersect ranges from a GAlignment object with a GRangesList
intersect
grangeslist
galignment
updated 6.9 years ago by
Hervé Pagès
16k • written 6.9 years ago by
ccanchaya
• 0
0
votes
4
replies
1.1k
views
Data structure for my dataset
metadata
grangeslist
granges
sample
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
Sim1pall8a
• 0
0
votes
3
replies
1.6k
views
genes symbol in RangedSummarizedExperiment object and add GRangesList to DESeqDataSet object in DESeq2
deseq2
rangedsummarizedexperiment
grangeslist
7.0 years ago
layal8785
• 0
2
votes
4
replies
1.7k
views
How to render summary list for `GRangesList` by using `SummarizedExperiment` package?
r
summarizedexperiment
grangeslist
7.0 years ago
Jurat Shahidin
▴ 80
4
votes
3
replies
5.1k
views
Splitting a GRanges object into List of GRange objects by position.
R
granges
subsett
grangeslist
group
updated 7.2 years ago by
Mike Smith
★ 6.5k • written 7.2 years ago by
RichardJActon
▴ 50
0
votes
2
replies
1.0k
views
Why does a `first_time` object appear when showing GRangesList object?
genomicranges
grangeslist
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
ericedwardbryant
• 0
3
votes
16
replies
4.0k
views
Any way to proceed duplicate removal for list of GRanges object ?
r
grangeslist
duplicate
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
Jurat Shahidin
▴ 80
0
votes
2
replies
1.2k
views
problem with makeGRangesListFromFeatureFragments
genomicranges
iranges
irangeslist
grangeslist
updated 7.3 years ago by
shepherl
3.8k • written 7.3 years ago by
mariamari693693
• 0
8
votes
7
replies
7.7k
views
Combining two GRangesLists
GRanges
grangeslist
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
llevar
▴ 20
5
votes
2
replies
1.3k
views
seeking idea for proper output representation for multiple GRanges overlapping
r
grangeslist
biocparallel
findoverlaps
7.7 years ago • updated 7.4 years ago
Jurat Shahidin
▴ 80
2
votes
4
replies
1.4k
views
Any way to combine two GRangesList easily ?
genomicranges
grangeslist
r
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Jurat Shahidin
▴ 80
3
votes
4
replies
1.2k
views
Any way to detach or simplify nested GRangesList ?
grangeslist
filtering
r
7.5 years ago
Jurat Shahidin
▴ 80
3
votes
5
replies
1.2k
views
How to sort set of GRanges object in the list by increasing order?
granges
grangeslist
genomicranges
7.7 years ago
Jurat Shahidin
▴ 80
6
votes
9
replies
2.1k
views
overlapsAny for elements in GRangesList
granges
grangeslist
overlapsAny
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
maltethodberg
▴ 170
0
votes
3
replies
1.0k
views
replace, merge and delete entries in GRangeList
grangeslist
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
shanrong.zhao
• 0
0
votes
5
replies
1.5k
views
how to annotate GenomicRanges objects with genome build
grangeslist
rangedsummarizedexperiment
parathyroidSE
genomicranges
granges
8.0 years ago
Levi Waldron
★ 1.1k
2
votes
2
replies
1.3k
views
How to rename seqlevels style (I, II, III, ...,XVI, Mito to 1,2,3,...16, 17.) in txdb granges?
renameSeqlevels
mapSeqlevels
grangeslist
granges
txdb
8.1 years ago
vinod.acear
▴ 50
0
votes
7
replies
1.6k
views
GRangesList and nearest neighbour search (name-specific)
grangeslist
8.3 years ago • updated 8.1 years ago
Maurits
• 0
4
votes
5
replies
1.8k
views
GRangesList and `seqlevels<-` with force=TRUE
GRangesList
GenomicRanges
updated 8.2 years ago by
Hervé Pagès
16k • written 8.2 years ago by
Simon Anders
★ 3.7k
9
votes
11
replies
4.1k
views
looping through a GRangesList object
GenomicRanges
GRangesList
updated 8.2 years ago by
Julian Gehring
★ 1.3k • written 8.2 years ago by
Simon Anders
★ 3.7k
4
votes
6
replies
1.6k
views
GenomicRanges mapply to all combinations of GRangesList objects
genomicranges
mapply
grangeslist
8.4 years ago
francesca casalino
▴ 50
0
votes
3
replies
1.1k
views
View of subsequences corresponding granges on +ve strand and rev. complementary of seq on -ve strand.
Views
granges
grangeslist
iranges
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
vinod.acear
▴ 50
2
votes
5
replies
2.0k
views
Intersecting a Granges and a GRangesList using within
granges
grangeslist
findoverlaps
updated 8.5 years ago by
Hervé Pagès
16k • written 8.6 years ago by
d r
▴ 150
2
votes
5
replies
2.1k
views
From a GRanges object to a GRangeList
granges
grangeslist
updated 8.9 years ago by
James W. MacDonald
65k • written 8.9 years ago by
Patrick Schorderet
▴ 20
2
votes
4
replies
1.8k
views
summing integer RLE
rle
list
irange
grangeslist
updated 9.0 years ago by
Chris Seidel
▴ 80 • written 9.0 years ago by
gen
▴ 30
0
votes
1
reply
1.1k
views
Mean Coverage version of stat_coverage and coverage?
grangeslist
granges
Genomicfeatures
bam
9.0 years ago
gen
▴ 30
4
votes
2
replies
2.4k
views
Easy way to sort GRangesList by seqname/start position?
grangeslist
sort
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
Johannes Rainer
★ 2.0k
4
votes
2
replies
1.8k
views
Combine two GRanges to a single GRangesList
granges
grangeslist
GenomicRanges
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
Sean Davis
21k
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