Bioconductor Graphite

Showing : graphite • reset

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983

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graphite

2.0 years ago • updated 22 months ago x • 0

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696

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graphite interaction

updated 3.6 years ago by gabriele.sales ▴ 100 • written 3.6 years ago by emisecherre • 0

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1.8k

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graphite spia runSPIA

updated 4.9 years ago by Bioconductor Community 0 • written 8.7 years ago by rgamini • 0

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998

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graphite

updated 5.0 years ago by gabriele.sales ▴ 100 • written 5.1 years ago by Lluís Revilla Sancho ▴ 720

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1.2k

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graphite potra

5.7 years ago genomic8328 ▴ 10

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1.4k

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bioconductor graphite kegg pathway analysis

updated 6.8 years ago by gabriele.sales ▴ 100 • written 6.8 years ago by haoran.chen • 0

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1.2k

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bioconductor graphite pathway analysis

updated 6.8 years ago by gabriele.sales ▴ 100 • written 6.8 years ago by haoran.chen • 0

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1.6k

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reactomepa reactome graphite

updated 6.9 years ago by gabriele.sales ▴ 100 • written 6.9 years ago by i.sudbery ▴ 30

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2.5k

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goseq graphite

8.8 years ago • updated 7.0 years ago b.nota ▴ 360

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1.4k

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graphite bioclite

8.5 years ago mhlinder • 0

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1.5k

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graphite

updated 8.7 years ago by gabriele.sales ▴ 100 • written 8.7 years ago by rgamini • 0

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1.1k

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Pathways graphite Pathways graphite

9.6 years ago Ryan C. Thompson 7.8k

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1.6k

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Pathways SPIA cycle graphite Pathways SPIA cycle graphite

9.9 years ago array chip ▴ 420

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1.8k

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Pathways Breast siggenes PROcess cycle graphite Pathways Breast siggenes PROcess cycle

updated 10.8 years ago by Enrica ▴ 20 • written 10.8 years ago by array chip ▴ 420

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2.3k

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Transcription Pathways Leukemia graphite Transcription Pathways Leukemia graphite

11.5 years ago Hamid Bolouri ▴ 90

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1.2k

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graphite graphite

updated 11.6 years ago by Paul Shannon ▴ 750 • written 11.6 years ago by Hamid Bolouri ▴ 90

16 results • Page 1 of 1

Recent ...

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Comment: How to read fcs3.2 files by James W. MacDonald 64k

You need to supply more information than saying you tried things and they didn't work. Show code with error messages.

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Looks good then.

Answer: DESeq2 : stat or lfcshrink for GSEA analysis by Michael Love 41k

There have been many threads on this support site on this topic.

Answer: Filter genes by expression for voomLmFit by James W. MacDonald 64k

`voomLmFit` is meant to be able to correctly specify the degrees of freedom when you have lots of zeros (as well as iterating if you use `d…

Comment: How to get DMR for Infinium methylation EPIC v2 by James W. MacDonald 64k

You want to make sure that you already have a `GenomicRatioSet` that you pass into `cpg.annotate`. ``` eset <- preprocessFunnorm(dat) myAn…

Votes

Answer: SingleR annotation of several slots/patients

Answer: List of Deprecated Packages for Bioc3.18

Attempting to import SBML file using R

Answer: RNASeq time course analysis, missing time points for control

Answer: biomaRt not working - lazy table error

Awards • All

Popular Question to Henrik Bengtsson ★ 2.4k

Popular Question to paul.johnston ▴ 10

Teacher to Mike Smith ★ 6.2k