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[SOLVED] Problem with the installation of Rgraphviz
Graphviz
Rgraphviz
2.3 years ago
c.bell.lu
• 0
4
votes
3
replies
1.9k
views
Pathview: Exporting non native KEGG pathway to PNG
pathview
bioconductor
graphics
graphviz
Pathview
updated 7.5 years ago by
dondelelcaro
▴ 10 • written 7.6 years ago by
guillermo.marco
▴ 30
0
votes
2
replies
1.4k
views
Pathview: Exporting non native KEGG pathway ignoring same.layer argument
Pathview
rgraphviz
graphviz
KEGG
updated 7.6 years ago by
Luo Weijun
★ 1.6k • written 7.6 years ago by
guillermo.marco
▴ 30
0
votes
0
replies
1.9k
views
Read Graphviz file .dot in R
r
rstudio
rgraphviz
graphviz
.dot
7.8 years ago
pleaseteachmehowtodoit
• 0
1
vote
1
reply
1.2k
views
embed url in pathview images
pathview
r
pdf
kegg
graphviz
updated 8.3 years ago by
Luo Weijun
★ 1.6k • written 8.3 years ago by
firstdayonthejob2003
• 0
3
votes
5
replies
2.2k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview
clusterProfiler
KEGGpath
visualization
Graphviz
updated 8.4 years ago by
Luo Weijun
★ 1.6k • written 8.4 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.2k
views
Rgraphviz: nodes with multiple colors
rgraphviz
graphviz
R
8.8 years ago
oliverfrings
• 0
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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