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[SOLVED] Problem with the installation of Rgraphviz
Graphviz
Rgraphviz
2.3 years ago
c.bell.lu
• 0
4
votes
3
replies
2.0k
views
Pathview: Exporting non native KEGG pathway to PNG
pathview
bioconductor
graphics
graphviz
Pathview
updated 7.6 years ago by
dondelelcaro
▴ 10 • written 7.7 years ago by
guillermo.marco
▴ 30
0
votes
2
replies
1.4k
views
Pathview: Exporting non native KEGG pathway ignoring same.layer argument
Pathview
rgraphviz
graphviz
KEGG
updated 7.7 years ago by
Luo Weijun
★ 1.6k • written 7.7 years ago by
guillermo.marco
▴ 30
0
votes
0
replies
1.9k
views
Read Graphviz file .dot in R
r
rstudio
rgraphviz
graphviz
.dot
7.8 years ago
pleaseteachmehowtodoit
• 0
1
vote
1
reply
1.2k
views
embed url in pathview images
pathview
r
pdf
kegg
graphviz
updated 8.3 years ago by
Luo Weijun
★ 1.6k • written 8.3 years ago by
firstdayonthejob2003
• 0
3
votes
5
replies
2.3k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview
clusterProfiler
KEGGpath
visualization
Graphviz
updated 8.4 years ago by
Luo Weijun
★ 1.6k • written 8.4 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.2k
views
Rgraphviz: nodes with multiple colors
rgraphviz
graphviz
R
8.8 years ago
oliverfrings
• 0
7 results • Page
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Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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