Bioconductor Grohmm

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groHMM

updated 23 months ago by Mike Smith ★ 6.5k • written 23 months ago by anusha.nagari ▴ 50

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groSeq groHMM

updated 5.6 years ago by anusha.nagari ▴ 50 • written 5.6 years ago by Deleted ▴ 70

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grohmm groseq next-generation sequencing R

5.6 years ago Deleted ▴ 70

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groHMM

updated 5.8 years ago by lee.kraus • 0 • written 5.8 years ago by warrena • 0

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

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Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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