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gsa
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4
replies
1.7k
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Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
9.0 years ago
Aileen Bahl
▴ 10
0
votes
5
replies
1.6k
views
gene set (enrichment) analysis
gsea
gsa
updated 8.1 years ago by
Axel Klenk
★ 1.0k • written 8.1 years ago by
Bogdan
▴ 670
1
vote
1
reply
1.4k
views
Illumina Infinium Global Screening Array (GSA) v1.0 for CRLMM
crlmm
gsa
microarray
illumina
written 6.0 years ago by
shaun
• 0
0
votes
2
replies
1.6k
views
gene set enrichment analysis
GSEA
GSA
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
Bogdan
▴ 670
0
votes
7
replies
2.0k
views
Statistic for GSA
gsea
concept
gsa
updated 7.2 years ago by
Pekka Kohonen
▴ 190 • written 7.2 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
1
reply
590
views
GSA type of input data
GSEA
GSA
vst
updated 15 months ago by
Michael Love
41k • written 15 months ago by
nhaus
▴ 30
1
vote
3
replies
1.4k
views
GSA error with any ExpressionSets
GSA
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
epercamh
• 0
0
votes
0
replies
732
views
GSA for comparison of geneset enricment analysis between multiple class
GSA
6.2 years ago
Seymoo
• 0
8 results • Page
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Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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