Bioconductor Gsa

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591

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GSEA GSA vst

updated 16 months ago by Michael Love 41k • written 16 months ago by nhaus ▴ 30

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1.6k

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GSEA GSA

updated 5.5 years ago by Gordon Smyth 50k • written 5.5 years ago by Bogdan ▴ 670

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1.4k

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crlmm gsa microarray illumina

written 6.0 years ago by shaun • 0

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735

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GSA

6.2 years ago Seymoo • 0

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2.0k

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gsea concept gsa

updated 7.2 years ago by Pekka Kohonen ▴ 190 • written 7.2 years ago by Lluís Revilla Sancho ▴ 730

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1.4k

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GSA

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by epercamh • 0

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1.6k

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gsea gsa

updated 8.1 years ago by Axel Klenk ★ 1.0k • written 8.1 years ago by Bogdan ▴ 670

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1.7k

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limma GSA confounding within-pair analysis 450k

9.0 years ago Aileen Bahl ▴ 10

8 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Votes

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

Awards • All

Scholar to ATpoint ★ 4.0k