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gseGo
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2
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4.2k
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How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2
clusterprofiler
visualization
gseGo
7.0 years ago • updated 3.4 years ago
tcalvo
▴ 90
4
votes
15
replies
3.7k
views
All genes in a set for gseGO funtion
gseGO
setSize
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
Adelyn
▴ 10
0
votes
1
reply
2.1k
views
clusterProlifer: plotGOgraph() error with gseGO() result
clusterprofiler
gseGO
plotGOgraph()
topGO
updated 7.1 years ago by
Guangchuang Yu
★ 1.2k • written 7.1 years ago by
cjsifuen
• 0
0
votes
1
reply
1.3k
views
Remove highly similar terms from a GO gene set enrichment analysis
clusterProfiler
gseGO
gene ontology
go semantic similarity
gene set enrichment analysis
5.8 years ago
jan.soderman
• 0
0
votes
1
reply
956
views
How to change the siez of lables in heatmap
software error
go
dose
heatplot
gseGo
5.2 years ago
aboumarshal
• 0
0
votes
1
reply
672
views
How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO
GeneSet
clusterProfiler
GeneSetEnrichment
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
manuelsokolov
• 0
2
votes
1
reply
124
views
Only positive enrichment score in GSEA
clusterProfiler
annotation
gseGO
gsea
OrgDb
updated 4 days ago by
Guido Hooiveld
★ 3.9k • written 6 days ago by
enee
▴ 10
7 results • Page
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Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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