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gseKEGG
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generating an order ranked gene list
gseKEGG
order ranked gene list
order rank
6.7 years ago
bruno.saubamea
• 0
2
votes
2
replies
148
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How many of my genes from my gene list are in each KEGG pathway?
Pathways
clusterProfiler
gseKEGG
KEGG
7 days ago • updated 6 days ago
julia_mcdonough
• 0
0
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0
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1.1k
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enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot
clusterProfiler
enrichKEGG
gseKEGG
5.2 years ago
yurigorelik
▴ 10
0
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0
replies
122
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Why output of GSEA is not the same but inversed, when you have the same but inversed input data?
clusterProfiler
gseKEGG
13 days ago
andromeda
• 0
4 results • Page
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Recent ...
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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Comment: Error retrieving ensembl gene id using biomaRt...
by
James W. MacDonald
65k
Or that. ;-D
Answer: Error retrieving ensembl gene id using biomaRt...
by
Mike Smith
★ 6.5k
I think you have the assignment operator (`<-`) the wrong way round. It should be `df_biomrt_tmp <- getBM(...`
Answer: Error retrieving ensembl gene id using biomaRt...
by
James W. MacDonald
65k
I can't reproduce. ``` > library(biomaRt) Warning message: package 'biomaRt' was built under R version 4.3.2 > library(org.Hs.eg.db…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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