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gsealm
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emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network
limma
GOstats
GSEAlm
edgeR
ReportingTools
Network
limma
GOstats
GSEAlm
edgeR
11.3 years ago
Malcolm Cook
★ 1.6k
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12
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2.2k
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new package for generating interactive HTML reports
Network
limma
GOstats
GSEAlm
edgeR
ReportingTools
Network
limma
GOstats
GSEAlm
edgeR
updated 11.3 years ago by
Malcolm Cook
★ 1.6k • written 11.3 years ago by
Josh Kaminker
▴ 20
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1.0k
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Help with GSEAlm
biomaRt
GSEAlm
biomaRt
GSEAlm
updated 11.8 years ago by
James W. MacDonald
65k • written 11.8 years ago by
b1gorsuch@comcast.net
▴ 20
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763
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question on GSEAlm
GSEAlm
GSEAlm
15.3 years ago
Mark W Kimpel
▴ 830
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2
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1.3k
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confused about J-G statistic of GSEAlm
GO
GSEAlm
GO
GSEAlm
updated 15.4 years ago by
rgentleman
★ 5.5k • written 15.4 years ago by
Mark W Kimpel
▴ 830
0
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2
replies
1.2k
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using GSEAlm with GO geneSetCollections
GO
affy
goTools
Category
GSEABase
GSEAlm
GO
affy
goTools
Category
GSEABase
GSEAlm
updated 15.4 years ago by
Dykema, Karl
▴ 90 • written 15.4 years ago by
Mark W Kimpel
▴ 830
0
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0
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654
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Finding genes with significant linear regression, or trend
GSEAlm
GSEAlm
15.9 years ago
Assaf Oron
▴ 40
7 results • Page
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Comment: Finding DEGs by using edgeR
by
Gordon Smyth
50k
Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …
Comment: How to make DGEList and design matrix by edgeR package
by
prity6459
• 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR
by
prity6459
• 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
Answer: How to make DGEList and design matrix by edgeR package
by
Gordon Smyth
50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
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A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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