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gsealm
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Finding genes with significant linear regression, or trend
GSEAlm
GSEAlm
15.9 years ago
Assaf Oron
▴ 40
0
votes
2
replies
1.2k
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using GSEAlm with GO geneSetCollections
GO
affy
goTools
Category
GSEABase
GSEAlm
GO
affy
goTools
Category
GSEABase
GSEAlm
updated 15.4 years ago by
Dykema, Karl
▴ 90 • written 15.4 years ago by
Mark W Kimpel
▴ 830
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2
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1.3k
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confused about J-G statistic of GSEAlm
GO
GSEAlm
GO
GSEAlm
updated 15.4 years ago by
rgentleman
★ 5.5k • written 15.4 years ago by
Mark W Kimpel
▴ 830
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745
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question on GSEAlm
GSEAlm
GSEAlm
15.2 years ago
Mark W Kimpel
▴ 830
0
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1
reply
1.0k
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Help with GSEAlm
biomaRt
GSEAlm
biomaRt
GSEAlm
updated 11.7 years ago by
James W. MacDonald
65k • written 11.7 years ago by
b1gorsuch@comcast.net
▴ 20
0
votes
12
replies
2.2k
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new package for generating interactive HTML reports
Network
limma
GOstats
GSEAlm
edgeR
ReportingTools
Network
limma
GOstats
GSEAlm
edgeR
updated 11.2 years ago by
Malcolm Cook
★ 1.6k • written 11.2 years ago by
Josh Kaminker
▴ 20
0
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0
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2.0k
views
emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network
limma
GOstats
GSEAlm
edgeR
ReportingTools
Network
limma
GOstats
GSEAlm
edgeR
11.2 years ago
Malcolm Cook
★ 1.6k
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
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Michael Love
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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