Bioconductor Gsva

Showing : gsva • reset

vote

replies

475

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tximport DESeq2 GSVA

5 weeks ago georgii.vdovin • 0

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replies

456

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drug RNASeq GSVA

written 8 weeks ago by Kent • 0

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1.0k

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enrichment GSVA ssGSEA

updated 12 weeks ago by Tyler Sagendorf ▴ 10 • written 3 months ago by Bob ▴ 10

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1.2k

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JobPosting Devel GSVA Software

written 2.2 years ago by Robert Castelo ★ 3.4k

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548

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ssgsea GSVA gsea

updated 5 months ago by Axel Klenk ★ 1.0k • written 5 months ago by Bioinformagician • 0

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1.5k

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GSVA GSVAdata RNAseq

6 months ago Lucy ▴ 60

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505

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parallelize workers GSVA

updated 7 months ago by Axel Klenk ★ 1.0k • written 7 months ago by johanna.galvis • 0

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511

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GSVA

7 months ago gad.abraham • 0

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1.0k

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DESeq2 GSVA ssGSEA

updated 7 months ago by Robert Castelo ★ 3.4k • written 7 months ago by michelafrancesconi8 • 0

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1.2k

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fgsea GSVA CAMERA

8 months ago Chris ▴ 20

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371

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GSVA

8 months ago Chris ▴ 20

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4.0k

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GSVA

9 months ago Alex • 0

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981

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GSVA

updated 9 months ago by James W. MacDonald 67k • written 9 months ago by Lucy ▴ 60

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2.5k

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ssgsea GSVA biotype proteincoding msigdb

updated 3 months ago by Ginny • 0 • written 13 months ago by snijesh ▴ 200

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3.2k

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GSVA

updated 10 months ago by Moritz ▴ 10 • written 3.6 years ago by resa • 0

15 results • Page 1 of 1

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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