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An ESR essay about software design, and how it applies to Bioconductor
GUI GUI
written 20.2 years ago by ▴ 50
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3
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1.2k
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ShortRead report function crash in x86_64-apple
GUI GUI
written 14.0 years ago by ▴ 20
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2
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1.3k
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An ESR essay about software design, and how it applies to Bioconductor
GUI GUI
updated 19 months ago by • 0 • written 20.2 years ago by ▴ 30
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1.2k
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An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 20.2 years ago by ▴ 810
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News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
7.5 years ago • updated 7.3 years ago Yuan Tian ▴ 90
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2.8k
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CanceR: Survival plots
cancer gui survival Kaplan-Meier
9.1 years ago • updated 9.0 years ago kmezhoud ▴ 10
0
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1
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1.4k
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CRSIPRseek: no summary file generated
GUI GUI
updated 9.0 years ago by ▴ 40 • written 9.7 years ago by ★ 4.3k
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3
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3.5k
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Error installing impute package
GUI impute DNAcopy GUI impute DNAcopy
updated 9.9 years ago by ★ 8.2k • written 9.9 years ago by ▴ 80
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1.1k
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Error in isVersioned(object)
GUI GUI
updated 10.0 years ago by 25k • written 10.0 years ago by ★ 13k
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8
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3.5k
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Error installing development version of DESeq2
GUI DESeq2 GUI DESeq2
updated 10.3 years ago by ★ 8.2k • written 10.3 years ago by ▴ 220
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limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 10.3 years ago by 65k • written 10.3 years ago by ★ 13k
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How to compare GO term lists and create matching network?
GO Network GUI Organism GO Network GUI Organism
updated 10.4 years ago by ▴ 750 • written 10.5 years ago by ▴ 160
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Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI impute DNAcopy GUI impute DNAcopy
updated 11.0 years ago by ★ 8.2k • written 11.0 years ago by ★ 3.0k
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853
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BSgenome.Dmelanogaster.UCSC.dm3 in R 3.0
GUI BSgenome BSgenome GUI BSgenome BSgenome
11.1 years ago Dan Tenenbaum ★ 8.2k
0
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7
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1.5k
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BSgenome.Dmelanogaster.UCSC.dm3 in R 3.0
GUI GUI
updated 11.1 years ago by ★ 8.2k • written 11.1 years ago by ★ 13k
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3
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Error: package/namespace load failed for ‘affycoretools
GO GUI Cancer GO GUI Cancer
updated 11.3 years ago by ★ 13k • written 11.3 years ago by ★ 2.0k
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3
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1.9k
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Error: 'devel' version requires a more recent R
GUI Cancer easyRNASeq GUI Cancer easyRNASeq
updated 11.4 years ago by 21k • written 11.4 years ago by ★ 2.0k
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869
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sizepower
qPCR GUI qPCR GUI
11.6 years ago Michael Salbaum ▴ 80
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1
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2.0k
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ChipPeakAnno / GRanges isolate peaks that do NOT overlap
GO GUI BSgenome BSgenome GO GUI BSgenome BSgenome
updated 11.6 years ago by ★ 4.3k • written 11.6 years ago by ▴ 110
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4
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2.3k
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Problems installing EBImage - Symbol not found: _gdk_display
GUI convert OLIN EBImage BiocInstaller GUI convert OLIN EBImage BiocInstaller
11.7 years ago Dan Tenenbaum ★ 8.2k
0
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1.2k
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Problems installing EBImage - Symbol not found: _gdk_display
GUI convert EBImage BiocInstaller GUI convert EBImage BiocInstaller
updated 11.7 years ago by ★ 8.2k • written 11.7 years ago by ▴ 30
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1.3k
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Warnings with running easyRNASeq with easyRNASeq tutorial
RNASeq Annotation GUI Cancer BSgenome BSgenome easyRNASeq RNASeq Annotation GUI Cancer
updated 11.7 years ago by ★ 1.2k • written 11.7 years ago by ★ 2.0k
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2
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1.9k
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How to extract expressed genes from Affymetrix data
GUI GUI
updated 11.7 years ago by ▴ 130 • written 11.8 years ago by ▴ 50
0
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9
replies
2.0k
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R IDE editor
GUI GUI
updated 12.0 years ago by ▴ 10 • written 12.0 years ago by ▴ 370
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votes
12
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2.4k
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problem with loading DESeq after upgrading from R 2.14 to R 2.15
GUI DESeq DEXSeq GUI DESeq DEXSeq
updated 12.0 years ago by ▴ 60 • written 12.0 years ago by ▴ 370
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0
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1.1k
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iFlow error messages
GUI iFlow GUI iFlow
12.2 years ago Gabriel Nathan Kaufman, Mr ▴ 60
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2
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1.2k
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Problems normalizing scanarray express data with limma
GUI limma a4 GUI limma a4
updated 12.3 years ago by 50k • written 12.3 years ago by ▴ 10
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0
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1.0k
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question/issue with multtest mt.maxT
Sequencing Microarray GUI Category Sequencing Microarray GUI Category
12.9 years ago Les Dethlefsen ▴ 20
0
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2
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1.5k
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GGtools and GGBase installation problems
Infrastructure GUI Ruuid GGtools GGBase Infrastructure GUI Ruuid GGtools GGBase
updated 13.1 years ago by 6.7k • written 13.1 years ago by ▴ 460
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1.6k
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GGtools and GGBase installation problems
GUI GGtools GGBase GUI GGtools GGBase
updated 13.2 years ago by 6.7k • written 13.2 years ago by ▴ 460
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0
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1.1k
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iFlow and current Bioconductor release
GUI Cancer iFlow GUI Cancer iFlow
13.2 years ago Chao-Jen Wong ▴ 580
0
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0
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927
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iFlow and current Bioconductor release
GUI iFlow GUI iFlow
13.2 years ago Gabriel Nathan Kaufman, Mr ▴ 60
0
votes
6
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1.5k
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Unable to Generate QC Report for mogene10stv1
Annotation GO GUI affy PROcess affyQCReport Annotation GO GUI affy PROcess affyQCReport
updated 13.3 years ago by 65k • written 13.3 years ago by ▴ 110
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1.3k
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: [R] Problems wih EBImage for windows 7 --Loading required package: abind Error in library.dynam(lib, package, package.lib) : shared library 'EBImag…
GUI convert EBImage GUI convert EBImage
13.3 years ago Evan Misshula ▴ 80
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1
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1.9k
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biomaRt - attribute mirbase is missing
SNP miRNA GUI biomaRt Vega SNP miRNA GUI biomaRt Vega
updated 13.4 years ago by ▴ 660 • written 13.4 years ago by ▴ 460
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1.2k
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EBImage installs but won't load on Mac OS 10.6.4
GO GUI PROcess convert EBImage GO GUI PROcess convert EBImage
13.4 years ago W. A. Green ▴ 40
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1.2k
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EBImage installs but won't load on Mac OS 10.6.4
GO GUI PROcess convert EBImage GO GUI PROcess convert EBImage
updated 13.4 years ago by ▴ 40 • written 13.4 years ago by ▴ 310
1
vote
2
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3.3k
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edgeR: error in readDGE
GUI edgeR GUI edgeR
updated 13.4 years ago by ★ 13k • written 13.4 years ago by ▴ 10
0
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0
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973
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Agi4x44PreProcess - filter.probes function
Annotation GUI zebrafish probe PROcess Annotation GUI zebrafish probe PROcess
13.5 years ago Neel Aluru ▴ 460
0
votes
3
replies
1.3k
views
EBImage installs but won't load on Mac OS 10.6.4
GUI PROcess convert EBImage GUI PROcess convert EBImage
updated 13.5 years ago by ▴ 310 • written 13.5 years ago by ▴ 40
0
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0
replies
1.1k
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Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
13.6 years ago Neel Aluru ▴ 460
0
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5
replies
2.1k
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iFlow error in opening FCS and LMD files
GUI iFlow GUI iFlow
updated 13.7 years ago by ▴ 140 • written 13.7 years ago by ▴ 40
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0
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1.1k
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launch of free R/Bioconductor Cloud Computing web-service
GUI GUI
13.7 years ago hbolouri@caltech.edu ▴ 10
0
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1
reply
937
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Rgraphviz in windows 7 - problem with GUI?
GUI graph Rgraphviz GUI graph Rgraphviz
updated 13.8 years ago by 16k • written 13.8 years ago by ▴ 10
0
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7
replies
1.4k
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rMAT tutorial. Data file too large?
Preprocessing GUI rMAT Preprocessing GUI rMAT
14.0 years ago Patrick Schorderet ▴ 50
0
votes
1
reply
928
views
iFlow error
GUI iFlow GUI iFlow
updated 14.0 years ago by ★ 1.6k • written 14.0 years ago by ▴ 70
0
votes
1
reply
1.3k
views
iFlow
GUI GUI
updated 14.0 years ago by ★ 1.6k • written 14.0 years ago by ▴ 70
0
votes
1
reply
881
views
Problems using rMAT tutorial
GUI rMAT GUI rMAT
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 50
0
votes
12
replies
3.3k
views
problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
updated 14.1 years ago by ★ 2.0k • written 14.1 years ago by ▴ 50
0
votes
0
replies
656
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Fwd: problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
14.1 years ago Sean Davis 21k
50 results • Page 1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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