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gwas
•
reset
0
votes
4
replies
744
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium
SNP
gwas
GWASdata
ldblock
13 months ago
Weiqiong
• 0
0
votes
0
replies
735
views
Job:
Postdoc position - Genetic epi/statistical genetics
GWAS
cancer
biomarkers
PRS
22 months ago
Sarah
• 0
0
votes
0
replies
741
views
Job:
Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
biostatistics
computationalbiology
GWAS
22 months ago
helene.ruffieux
• 0
0
votes
0
replies
693
views
Job:
Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
computationalbiology
immunology
GWAS
biostatistics
2.1 years ago
helene.ruffieux
• 0
0
votes
1
reply
670
views
gwas power calculation for quantitative traits
power
GWAS
written 2.7 years ago by
rajya82
• 0
1
vote
2
replies
4.0k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 3.2 years ago by
Anna
• 0 • written 4.4 years ago by
solanum
• 0
0
votes
0
replies
902
views
Job:
Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS
lung cancer
functional genomics
eQTL
sequencing
Job
4.0 years ago
jiyeon.choi2
• 0
0
votes
3
replies
1.2k
views
GENESIS: ascertainment in GWAS
genesis
fitnullmodel
gwas
ascertainment
updated 4.7 years ago by
mconomos
▴ 70 • written 4.8 years ago by
ferranpauls10
• 0
0
votes
0
replies
735
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS
CGEN
gxe
5.2 years ago
pwjeffries
• 0
0
votes
1
reply
967
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
5.2 years ago
naglemi
▴ 10
1
vote
1
reply
923
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS
GWAS
AssocTestMM
updated 5.4 years ago by
mconomos
▴ 70 • written 5.4 years ago by
naglemi
▴ 10
0
votes
1
reply
971
views
Unable to build GDS with more than 255 scaffolds?
GENESIS
GWAS
GDS
updated 5.6 years ago by
zhengx
▴ 30 • written 5.6 years ago by
naglemi
▴ 10
0
votes
0
replies
866
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq
enrichment
GWAS
5.7 years ago
zhu
• 0
0
votes
3
replies
1.2k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS
assoctestmm
GWAS
updated 5.8 years ago by
mconomos
▴ 70 • written 5.8 years ago by
naglemi
▴ 10
3
votes
4
replies
1.5k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM
GWAS
GENESIS
assocTestMM
updated 5.8 years ago by
mconomos
▴ 70 • written 5.8 years ago by
naglemi
▴ 10
0
votes
1
reply
926
views
GWAS: access Imputation probabilities: snpStats
gwas
snpstats
GWAS
Imputation
snpStats
5.8 years ago
GENOMIC_region
• 0
0
votes
0
replies
1.1k
views
Job:
BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq
gwas
R
bioconductor
Job
6.8 years ago
IV
▴ 30
2
votes
0
replies
1.4k
views
Job:
Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job
GWAS
genetics
genomics
neuro
Job
7.9 years ago
enridomenici
▴ 10
0
votes
0
replies
1.1k
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
8.7 years ago
Vincent J. Carey, Jr.
6.7k
19 results • Page
1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Votes
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
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