Showing : gwas • reset
3
votes
4
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1.5k
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Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 5.7 years ago by ▴ 70 • written 5.7 years ago by ▴ 10
2
votes
0
replies
1.4k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
7.8 years ago enridomenici ▴ 10
1
vote
1
reply
914
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 5.4 years ago by ▴ 70 • written 5.4 years ago by ▴ 10
1
vote
2
replies
4.0k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 3.2 years ago by • 0 • written 4.4 years ago by • 0
0
votes
0
replies
863
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
5.7 years ago zhu • 0
0
votes
1
reply
962
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 5.6 years ago by ▴ 30 • written 5.6 years ago by ▴ 10
0
votes
1
reply
961
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.2 years ago naglemi ▴ 10
0
votes
0
replies
730
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
5.2 years ago pwjeffries • 0
0
votes
3
replies
1.2k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 4.7 years ago by ▴ 70 • written 4.7 years ago by • 0
0
votes
0
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889
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
4.0 years ago jiyeon.choi2 • 0
0
votes
1
reply
662
views
gwas power calculation for quantitative traits
power GWAS
written 2.6 years ago by • 0
0
votes
0
replies
686
views
Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
2.1 years ago helene.ruffieux • 0
0
votes
0
replies
723
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
22 months ago Sarah • 0
0
votes
4
replies
737
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
13 months ago Weiqiong • 0
0
votes
0
replies
1.1k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
8.7 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
731
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
22 months ago helene.ruffieux • 0
0
votes
0
replies
1.1k
views
Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
6.8 years ago IV ▴ 30
0
votes
1
reply
922
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
5.8 years ago GENOMIC_region • 0
0
votes
3
replies
1.2k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 5.7 years ago by ▴ 70 • written 5.7 years ago by ▴ 10
19 results • Page 1 of 1
Recent ...
Replies
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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