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Comment: airway package not compatible with R version 4.1.2 (2021-11-01)
by
ATpoint
▴
970
`data(airway)` is your friend. The CRAN error comes from the fact that it is not a CRAN package, not that it is a version problem itself.
Comment: airway package not compatible with R version 4.1.2 (2021-11-01)
by
Lluís Revilla Sancho
▴
660
I think it would help if you try again to install it via `BiocManager::install("airway")` and report the exact text output (without quittin…
Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
by
Michael Love
35k
This looks as expected with the control genes centered on the x-axis (yes, these can have high variance, this is discussed in work by Risso…
Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
by
argonvibio
•
0
Hello Michael, and thank you for your reply.
I have done as you described, estimating size factors with controlGenes before DESeq, but the…
Answer: DiffBind issue: zero values for all peaks in one chromosome
by
Rory Stark
★
4.3k
Losing the reads for one tissue on one chromosome doesn't sound too good!
I notice that you are using `DiffBind_3.0`, which is out of da…
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