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Comment: DEXseq error unable to find an inherited method for function NSBS for signature
by
ta_awwad
▴
10
Hi there,
did you manage to solve this problem?
thanks
TA
Comment: Error in Create switchAnalyzeRlist
by
k.vitting.seerup
▴
120
I just double checked and the fasta files found [here][1] should work. Please also take a look at [this][2] if you want to use Ensembl.
…
Answer: Correlation between two different datasets: between results of RNAseq and absenc
by
Michael Love
37k
Re: LFC, if you are working with this and then downstream analysis, I'd recommend `lfcShrink` if you aren't already using this. It will shr…
Answer: Strange Dispersion plot
by
Michael Love
37k
This indeed looks strange, I would immediately suspect some weird batch effects. Try all kinds of diagnostic plots like, boxplot, PCA, corr…
Answer: Correlation between CpG methylation and gene expression from DESeq2-> Normalizat
by
Michael Love
37k
In this case, can you say why you want to normalize for gene length? In our tximport/tximeta pipeline, it would correct for differential ge…
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