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Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE by Michael Love 34k
See the tidy argument details.
Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE by Ghida • 0
Hi Michael love, I am having the same problem. I made sure that my counts data is matrix and that the number of rows in the metadata is e…
Comment: How similar or disimilar are two sets of DEG? by ATpoint ▴ 850
Sounds like a job for gene set enrichment analysis, e.g. via http://bioconductor.org/packages/release/bioc/html/fgsea.html That will check…
Comment: Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dat by IIart.hubII • 0
What is "coad_clear" in this case? What data have you allotted to it? Can you please share the whole code? Or can anyone answer this questi…
Comment: GenomicScores package: availableGScores and getGScores functions not working by Robert Castelo ★ 2.7k
hi, Indeed you were using an outdated version of the package. Regarding how to install current release version, please read first carefull…
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A: Differential expression of RNA-seq data using limma and voom()
A: Differential expression analysis starting from TPM data
Comment: deseq2 machine sizing best practices for very large data set
Comment: Extracting normalized counts in MEDIPS
Comment: "full model matrix is less than full rank"
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