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S4Vectors DataFrame haven_labelled haven

updated 22 months ago by Danny Smith ▴ 20 • written 22 months ago by Daniel E. Weeks ▴ 30

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Comment: Annotation for EPICv2 by shepherl 4.0k

Don't know if any of these are of use or if these are what ChAMP uses under the hood: [IlluminaHumanMethylationEPICv2anno.20a1.hg38](https…

Comment: minfi support of illumina Infinium methylationEPIC v2.0 by wl_xxz • 0

Hello James! Is there an annotation package for the latest EPICv2 A2 sub-version? If not, I am happy to make one by modifying the existing …

Comment: Highly DE genes but small count difference within conditions by bioshot.com • 0

Thanks for the suggestions. I simplified the model to *design=~genotype*. I tried both with and without *lfcshrinkage* and I am not finding…

Comment: Spectra and PSMatch- trouble in reducePSMs, joinSpectraData, or countIdentificat by Laurent Gatto 1.6k

Hmm, it is a bit surprising that you have so many the same scores. I would try to look at the actual spectra, and check the matching peaks,…

Comment: How to control batch effect if Group and batch are same? by ATpoint ★ 4.5k

Spam is strong in here.

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Trying to use enrichGO

Answer: dmpFinder for other objects

GSVA ssGSEA vs. Broad implementation of ssGSEA

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