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hclust
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reset
1
vote
7
replies
2.8k
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Error with hclust
dendrogram
hclust
textanalysis
R
RStudio
3.0 years ago
Abby
▴ 10
1
vote
4
replies
1.4k
views
Difference in PCA variance calculation in DESeq2
deseq2
pca
hclust
updated 4.5 years ago by
Michael Love
41k • written 4.5 years ago by
ag1805x
▴ 80
0
votes
1
reply
1.9k
views
Observation/case weighting in cluster analysis in R
hclust
hierarchical clustering
clustering
weight
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
danielle.newby
• 0
0
votes
1
reply
2.7k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap
hclust
R
dendrogram
6.9 years ago
vd4mmind
• 0
0
votes
3
replies
1.5k
views
WGCNA crashes R on OSX
WGCNA
hclust
7.0 years ago
bag59
• 0
0
votes
1
reply
1.7k
views
heatmap.2 reorder branches
heatmap.2
hclust
reorderfun
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
b.nota
▴ 360
0
votes
1
reply
1.6k
views
Microarray time-course clustering, using "hclust" in masigPro
clustering
hclust
maSigPro
updated 8.2 years ago by
efejiroe
• 0 • written 8.7 years ago by
dimitri.leonid.lindenwald
▴ 50
1
vote
2
replies
2.4k
views
Supervised clustering by sample
hclust
heatmap
9.2 years ago
rmgreer
• 0
1
vote
2
replies
4.0k
views
Rearrange dendrogram to match merged modules in WGCNA?
wgcna
dendrogram
network
hclust
updated 9.5 years ago by
Keith Hughitt
▴ 180 • written 9.5 years ago by
Jon Bråte
▴ 250
0
votes
1
reply
3.5k
views
Plotting an hclust sub-tree in WGCNA?
wgcna
hclust
plotdendroandcolors
dendrogram
updated 9.6 years ago by
James W. MacDonald
65k • written 9.6 years ago by
Keith Hughitt
▴ 180
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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