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hclust
•
reset
1
vote
7
replies
2.8k
views
Error with hclust
dendrogram
hclust
textanalysis
R
RStudio
3.1 years ago • updated 3.0 years ago
Abby
▴ 10
1
vote
4
replies
1.4k
views
Difference in PCA variance calculation in DESeq2
deseq2
pca
hclust
updated 4.5 years ago by
Michael Love
41k • written 4.5 years ago by
ag1805x
▴ 80
0
votes
3
replies
1.5k
views
WGCNA crashes R on OSX
WGCNA
hclust
7.0 years ago
bag59
• 0
1
vote
2
replies
2.4k
views
Supervised clustering by sample
hclust
heatmap
9.2 years ago
rmgreer
• 0
1
vote
2
replies
4.0k
views
Rearrange dendrogram to match merged modules in WGCNA?
wgcna
dendrogram
network
hclust
updated 9.6 years ago by
Keith Hughitt
▴ 180 • written 9.6 years ago by
Jon Bråte
▴ 250
0
votes
1
reply
3.5k
views
Plotting an hclust sub-tree in WGCNA?
wgcna
hclust
plotdendroandcolors
dendrogram
updated 9.6 years ago by
James W. MacDonald
65k • written 9.6 years ago by
Keith Hughitt
▴ 180
0
votes
1
reply
1.6k
views
Microarray time-course clustering, using "hclust" in masigPro
clustering
hclust
maSigPro
updated 8.2 years ago by
efejiroe
• 0 • written 8.7 years ago by
dimitri.leonid.lindenwald
▴ 50
0
votes
1
reply
1.9k
views
Observation/case weighting in cluster analysis in R
hclust
hierarchical clustering
clustering
weight
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
danielle.newby
• 0
0
votes
1
reply
2.7k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap
hclust
R
dendrogram
6.9 years ago
vd4mmind
• 0
0
votes
1
reply
1.7k
views
heatmap.2 reorder branches
heatmap.2
hclust
reorderfun
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
b.nota
▴ 360
10 results • Page
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Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Comment: Different Shrunk Log2FC according with reference
by
Michael Love
41k
I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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