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hclust
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reset
1
vote
7
replies
2.7k
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Error with hclust
dendrogram
hclust
textanalysis
R
RStudio
3.0 years ago • updated 2.9 years ago
Abby
▴ 10
1
vote
4
replies
1.4k
views
Difference in PCA variance calculation in DESeq2
deseq2
pca
hclust
updated 4.4 years ago by
Michael Love
41k • written 4.4 years ago by
ag1805x
▴ 80
0
votes
1
reply
1.9k
views
Observation/case weighting in cluster analysis in R
hclust
hierarchical clustering
clustering
weight
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
danielle.newby
• 0
0
votes
1
reply
2.7k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap
hclust
R
dendrogram
6.9 years ago
vd4mmind
• 0
0
votes
3
replies
1.5k
views
WGCNA crashes R on OSX
WGCNA
hclust
7.0 years ago
bag59
• 0
0
votes
1
reply
1.6k
views
heatmap.2 reorder branches
heatmap.2
hclust
reorderfun
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
b.nota
▴ 360
0
votes
1
reply
1.6k
views
Microarray time-course clustering, using "hclust" in masigPro
clustering
hclust
maSigPro
updated 8.1 years ago by
efejiroe
• 0 • written 8.6 years ago by
dimitri.leonid.lindenwald
▴ 50
1
vote
2
replies
2.3k
views
Supervised clustering by sample
hclust
heatmap
9.1 years ago
rmgreer
• 0
1
vote
2
replies
3.9k
views
Rearrange dendrogram to match merged modules in WGCNA?
wgcna
dendrogram
network
hclust
updated 9.5 years ago by
Keith Hughitt
▴ 180 • written 9.5 years ago by
Jon Bråte
▴ 250
0
votes
1
reply
3.5k
views
Plotting an hclust sub-tree in WGCNA?
wgcna
hclust
plotdendroandcolors
dendrogram
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
Keith Hughitt
▴ 180
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Comment: error when using M-values in ChAMP
by
hortenseguillaume96
• 0
Hello Tian, I'd like to get the M-values matrix so that I can carry out a linear regression study. However, when I apply the champ.load fu…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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