Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
hdf5
•
reset
8
votes
11
replies
11k
views
R: error while reading .h5 files from R using rdhf5 package
rhdf5
r
hdf5
updated 11 months ago by
Yijing
• 0 • written 6.8 years ago by
him4u324
▴ 10
1
vote
2
replies
2.9k
views
Unable to open hd5 file using rhdf5 but can list contents
hdf5
h5
rhdf5
updated 21 months ago by
Mike Smith
★ 6.5k • written 21 months ago by
dNand
• 0
2
votes
11
replies
1.8k
views
failure importing data with tximport with error information
software error
tximport
hdf5
updated 4.5 years ago by
Michael Love
41k • written 4.5 years ago by
me5537
▴ 10
0
votes
3
replies
1.3k
views
Rhdf5 C-library out of date
rhdf5
hdf5
updated 5.9 years ago by
Mike Smith
★ 6.5k • written 5.9 years ago by
channsoden
• 0
14
votes
10
replies
4.8k
views
HDF5 reading speed
rhdf5
hdf5
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
felicien.meunier
▴ 40
1
vote
1
reply
1.3k
views
Contradictory Messages from rhdf5
rhdf5
hdf5
updated 6.7 years ago by
Mike Smith
★ 6.5k • written 7.0 years ago by
Kipper Fletez-Brant
▴ 150
0
votes
5
replies
2.8k
views
Load saved RangedSummarizedExperiment as Deseq2 dataset
deseq2
hdf5
rangedsummarizedexperiment
rnaseq
6.7 years ago
Jakob Petereit
• 0
3
votes
8
replies
3.0k
views
Tutorial:
"developing" with HDF5Array
hdf5
DelayedArray
summarizedexperiment
Tutorial
7.2 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
1.9k
views
phyloseq biom json format conversion needed to hdf5 format for qiime
biom
json
hdf5
qiime
phyloseq
updated 7.5 years ago by
Bernd Fischer
▴ 550 • written 7.5 years ago by
newmanss
• 0
1
vote
2
replies
1.7k
views
API for Bioconductor
rhdf5
hdf5
dependencies
updated 7.8 years ago by
Mike Smith
★ 6.5k • written 7.8 years ago by
thabermann
• 0
3
votes
6
replies
2.3k
views
hdf5load equivalent for RHDF5
hdf5
rhdf5
hdf
updated 8.1 years ago by
Bernd Fischer
▴ 550 • written 8.1 years ago by
manfredodiporcia
• 0
1
vote
2
replies
4.8k
views
rhdf5 package fails to install
rhdf5
hdf5
8.5 years ago
trombe.piju
• 0
2
votes
2
replies
3.4k
views
Problem with HDF5 and ncdfFlow
installation
dependency
library
hdf5
8.6 years ago
Ulrik Stervbo
▴ 30
1
vote
1
reply
3.4k
views
How can I add rows to a dataframe in an HDF5 file using rhdf5?
rhdf5
hdf5
updated 8.8 years ago by
Nathaniel Hayden
▴ 180 • written 8.8 years ago by
serefarikan
• 0
2
votes
2
replies
2.1k
views
Suppressing rhdf5 error messages
rhdf5
hdf5
updated 8.8 years ago by
Bernd Fischer
▴ 550 • written 8.8 years ago by
Mike Smith
★ 6.5k
1
vote
2
replies
1.8k
views
H5Sset_extent_simple is not exposed in rhdf5, what it means for datasets where dims != maxdims
rhdf5
hdf5
updated 9.4 years ago by
Bernd Fischer
▴ 550 • written 9.4 years ago by
Nathaniel Hayden
▴ 180
16 results • Page
1 of 1
Recent ...
Replies
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Awards
• All
Popular Question
to
shepherl
3.8k
Popular Question
to
BioinfGuru
▴ 20
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Locations
• All
Ireland,
just now
Sweden,
just now
Netherlands,
1 minute ago
Germany,
2 minutes ago
France,
8 minutes ago
Traffic: 718 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6