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hdf5
•
reset
8
votes
11
replies
11k
views
R: error while reading .h5 files from R using rdhf5 package
rhdf5
r
hdf5
updated 12 months ago by
Yijing
• 0 • written 6.8 years ago by
him4u324
▴ 10
1
vote
2
replies
3.0k
views
Unable to open hd5 file using rhdf5 but can list contents
hdf5
h5
rhdf5
updated 22 months ago by
Mike Smith
★ 6.5k • written 22 months ago by
dNand
• 0
2
votes
11
replies
1.8k
views
failure importing data with tximport with error information
software error
tximport
hdf5
updated 4.5 years ago by
Michael Love
41k • written 4.5 years ago by
me5537
▴ 10
0
votes
3
replies
1.3k
views
Rhdf5 C-library out of date
rhdf5
hdf5
updated 5.9 years ago by
Mike Smith
★ 6.5k • written 5.9 years ago by
channsoden
• 0
14
votes
10
replies
4.8k
views
HDF5 reading speed
rhdf5
hdf5
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
felicien.meunier
▴ 40
1
vote
1
reply
1.3k
views
Contradictory Messages from rhdf5
rhdf5
hdf5
updated 6.7 years ago by
Mike Smith
★ 6.5k • written 7.0 years ago by
Kipper Fletez-Brant
▴ 150
0
votes
5
replies
2.8k
views
Load saved RangedSummarizedExperiment as Deseq2 dataset
deseq2
hdf5
rangedsummarizedexperiment
rnaseq
6.8 years ago
Jakob Petereit
• 0
3
votes
8
replies
3.0k
views
Tutorial:
"developing" with HDF5Array
hdf5
DelayedArray
summarizedexperiment
Tutorial
7.2 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
1.9k
views
phyloseq biom json format conversion needed to hdf5 format for qiime
biom
json
hdf5
qiime
phyloseq
updated 7.5 years ago by
Bernd Fischer
▴ 550 • written 7.5 years ago by
newmanss
• 0
1
vote
2
replies
1.7k
views
API for Bioconductor
rhdf5
hdf5
dependencies
updated 7.8 years ago by
Mike Smith
★ 6.5k • written 7.8 years ago by
thabermann
• 0
3
votes
6
replies
2.3k
views
hdf5load equivalent for RHDF5
hdf5
rhdf5
hdf
updated 8.1 years ago by
Bernd Fischer
▴ 550 • written 8.1 years ago by
manfredodiporcia
• 0
1
vote
2
replies
4.8k
views
rhdf5 package fails to install
rhdf5
hdf5
8.5 years ago
trombe.piju
• 0
2
votes
2
replies
3.4k
views
Problem with HDF5 and ncdfFlow
installation
dependency
library
hdf5
8.6 years ago
Ulrik Stervbo
▴ 30
1
vote
1
reply
3.4k
views
How can I add rows to a dataframe in an HDF5 file using rhdf5?
rhdf5
hdf5
updated 8.8 years ago by
Nathaniel Hayden
▴ 180 • written 8.8 years ago by
serefarikan
• 0
2
votes
2
replies
2.1k
views
Suppressing rhdf5 error messages
rhdf5
hdf5
updated 8.8 years ago by
Bernd Fischer
▴ 550 • written 8.8 years ago by
Mike Smith
★ 6.5k
1
vote
2
replies
1.8k
views
H5Sset_extent_simple is not exposed in rhdf5, what it means for datasets where dims != maxdims
rhdf5
hdf5
updated 9.4 years ago by
Bernd Fischer
▴ 550 • written 9.4 years ago by
Nathaniel Hayden
▴ 180
16 results • Page
1 of 1
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Replies
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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