12 days ago • updated 6 days ago
jacques.imbert
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167
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4
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6
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644
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2
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496
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updated 9 months ago by
James W. MacDonald
65k
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written 9 months ago by
gabriele.favaretto
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3
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updated 19 months ago by
Peter Hickey
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740
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written 19 months ago by
merv
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120
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3
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960
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updated 2.5 years ago by
Mike Smith
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6.5k
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written 2.5 years ago by
eric.kern13
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updated 6 months ago by
Hervé Pagès
16k
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written 2.6 years ago by
Koki
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2.8 years ago
Koki
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10
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updated 2.8 years ago by
Hervé Pagès
16k
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written 2.9 years ago by
Koki
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updated 2.9 years ago by
Hervé Pagès
16k
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written 2.9 years ago by
Pedro Baldoni
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40
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870
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9
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8
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1.4k
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updated 2.9 years ago by
Hervé Pagès
16k
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written 2.9 years ago by
Pedro Baldoni
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3.0 years ago
Koki
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1.5k
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updated 2.9 years ago by
Hervé Pagès
16k
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written 3.0 years ago by
Koki
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4
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updated 5.2 years ago by
Aaron Lun
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28k
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written 5.2 years ago by
sarah.williams1
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updated 5.7 years ago by
James W. MacDonald
65k
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written 5.7 years ago by
Alexander Azarian
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updated 5.9 years ago by
Mike Smith
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6.5k
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written 6.0 years ago by
cath
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2.3k
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Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
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Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
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Thank you for your comment!
1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right?
Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
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IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
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This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
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I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
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