Showing : heatmap.2 • reset
1
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496
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Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 12 months ago by ▴ 80 • written 13 months ago by ▴ 10
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1
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677
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collided row names in heatmap.2
heatmap.2 genefilter deseq2
updated 2.7 years ago by 65k • written 2.7 years ago by • 0
2
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2
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3.8k
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ColSideColors set by rows for heatmap.2 in RStudio
rstudio heatmap.2
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
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1
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780
views
RPKM representation in heatmap is not accurate
heatmap.2 z-score
updated 5.8 years ago by ★ 28k • written 5.8 years ago by • 0
5
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3
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12k
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Interpreting heatmap in DESEQ2
deseq2 heatmap.2
updated 6.1 years ago by ▴ 150 • written 6.1 years ago by • 0
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0
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1.6k
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2 hierarchical clustering microarray RNA seq DEG
6.2 years ago lawarde.ankita1 ▴ 30
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2
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1.2k
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gene names disapper from heatmap.2 after adding gene descripton
heatmap.2 edger
6.5 years ago mictadlo ▴ 10
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4
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6.4k
views
Sample-to-sample distance matrix using heatmap.2
heatmap.2 gplots DESeq2
6.6 years ago Jane Merlevede ▴ 90
8
votes
1
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9.2k
views
extracting the genes associated with the clusters
heatmap.2 pheatmap complexheatmap heatplus
updated 7.1 years ago by ▴ 680 • written 7.1 years ago by ▴ 670
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1
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1.7k
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heatmap.2 reorder branches
heatmap.2 hclust reorderfun
updated 7.2 years ago by 65k • written 7.2 years ago by ▴ 360
2
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1
reply
3.5k
views
Assign custom dendrogram to ComplexHeatmap Heatmap object
complexheatmap heatmap.2 dendrogram dendextend heatmap
updated 7.5 years ago by ▴ 200 • written 7.5 years ago by ▴ 660
1
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3
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2.2k
views
How to combine replicates creating heatmap?
deseq2 edgeR heatmap.2
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 50
1
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5
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4.2k
views
Heatmaps with replicates or triplicate data sets with counts to EdgeR, DESeq, or DESeq2
heatmap.2 heatmap edgeR deseq2 deseq
updated 8.0 years ago by 41k • written 8.0 years ago by ▴ 10
1
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1
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1.5k
views
heatmap2 error key
heatmap.2
updated 8.0 years ago by 65k • written 8.0 years ago by ▴ 90
1
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2
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2.5k
views
R crash when matrix nrows exceeds 45000 using pheatmap/heatmap.2
pheatmap heatmap.2
8.1 years ago John ▴ 30
1
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0
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2.6k
views
heatmap.2() making columns narrower to make them look like microarray?
heatmap.2 pheatmap
8.6 years ago AJC ▴ 10
0
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0
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2.6k
views
Problem with the colors in the heatmap.2 function and the color key values range
gplots heatmap.2 affymetrix microarrays color key
8.6 years ago svlachavas ▴ 830
4
votes
8
replies
7.9k
views
Scaling genes to have unit variance for clustering / heatmaps with DESeq2
deseq2 heatmap.2 bicluster pheatmap
updated 6.5 years ago by 41k • written 8.6 years ago by ▴ 10
1
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2
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10k
views
Use of various distance measures and clustering methods in heatmap creation
gplots heatmap.2 bioconductor pearsoncorrelation average
8.8 years ago svlachavas ▴ 830
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2
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1.4k
views
Possible construction of heatmap for clustering only genes for different treatments and not samples
heatmap.2 clustering common DEG genes bioconductor
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 830
0
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1
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1.5k
views
Error when trying to plot sample distance from and assay object generated with DESeq2
deseq2 heatmap.2
updated 8.9 years ago by 41k • written 8.9 years ago by ▴ 30
0
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7
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4.9k
views
Visualization of rownames in the heatmap.2 function for selected DE genes of a microarray dataset
heatmap.2 gplots differential gene expression visualization
9.1 years ago svlachavas ▴ 830
22 results • Page 1 of 1
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Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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