Showing : heatmaps • reset
0
votes
1
reply
640
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 5 months ago by ▴ 780 • written 5 months ago by • 0
0
votes
1
reply
804
views
edgeR heatmap construction and interpretation
heatmaps
updated 6 months ago by 50k • written 6 months ago by • 0
0
votes
3
replies
568
views
Installing Gpart
gpart heat heatmaps
updated 6 months ago by 65k • written 6 months ago by • 0
0
votes
2
replies
594
views
Drawing a heatmap with only limited genes
heatmaps
updated 10 months ago by • 0 • written 10 months ago by • 0
1
vote
1
reply
501
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 12 months ago by ▴ 80 • written 13 months ago by ▴ 10
0
votes
1
reply
612
views
Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 13 months ago by ★ 4.0k • written 13 months ago by • 0
0
votes
2
replies
868
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
14 months ago • updated 13 months ago shuangshuang • 0
0
votes
0
replies
802
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
14 months ago gianni.drm • 0
0
votes
1
reply
620
views
struggling to create a heatmap
DESeq2 heatmaps
updated 14 months ago by ★ 4.0k • written 14 months ago by ▴ 10
2
votes
3
replies
962
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 15 months ago by ▴ 40 • written 15 months ago by ▴ 10
2
votes
2
replies
607
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
15 months ago Sooni ▴ 10
2
votes
5
replies
3.1k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 14 months ago by 50k • written 16 months ago by ▴ 10
2
votes
5
replies
1.5k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
16 months ago Katharina • 0
0
votes
1
reply
2.0k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 18 months ago by 41k • written 18 months ago by • 0
0
votes
3
replies
1.1k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 19 months ago by 65k • written 19 months ago by • 0
0
votes
1
reply
1.5k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 20 months ago by ▴ 260 • written 20 months ago by • 0
1
vote
1
reply
977
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 22 months ago by 65k • written 22 months ago by • 0
0
votes
2
replies
3.7k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
22 months ago Bhavana • 0
0
votes
3
replies
1.2k
views
Persisting error in making a heatmap
heatmaps gplots
22 months ago beslinail • 0
1
vote
1
reply
765
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.0 years ago by 65k • written 2.0 years ago by • 0
0
votes
1
reply
1.0k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by • 0
0
votes
2
replies
1.7k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
2.9 years ago Clara • 0
0
votes
1
reply
2.4k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.1 years ago by ★ 3.9k • written 3.1 years ago by ▴ 10
1
vote
1
reply
826
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 3.2 years ago by 41k • written 3.2 years ago by ▴ 30
4
votes
5
replies
1.3k
views
DEseq2 results
heatmaps DEGs PCA
updated 3.1 years ago by ★ 3.9k • written 3.2 years ago by • 0
0
votes
0
replies
715
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 5.1 years ago by 65k • written 5.1 years ago by ▴ 10
26 results • Page 1 of 1
Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Awards • All
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Popular Question to Bine ▴ 40
Locations • All
France, 5 minutes ago
WEHI, Melbourne, Australia, 6 minutes ago
Iran, 8 minutes ago
France, 17 minutes ago
Ireland, 30 minutes ago
Traffic: 888 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6