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Heatmap RNA-seqanalysis heatmaps DESeq2

updated 5 months ago by Basti ▴ 780 • written 5 months ago by langziv • 0

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updated 6 months ago by Gordon Smyth 50k • written 6 months ago by ulin.1 • 0

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gpart heat heatmaps

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by Benjamin • 0

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updated 10 months ago by sayite3688 • 0 • written 10 months ago by dania.khalid • 0

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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

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Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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