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heatmaps
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617
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Error when trying to create a heatmap with DESeq2
Heatmap
RNA-seqanalysis
heatmaps
DESeq2
updated 5 months ago by
Basti
▴ 770 • written 5 months ago by
langziv
• 0
0
votes
1
reply
791
views
edgeR heatmap construction and interpretation
heatmaps
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
ulin.1
• 0
0
votes
3
replies
559
views
Installing Gpart
gpart
heat
heatmaps
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Benjamin
• 0
0
votes
2
replies
583
views
Drawing a heatmap with only limited genes
heatmaps
updated 9 months ago by
sayite3688
• 0 • written 9 months ago by
dania.khalid
• 0
1
vote
1
reply
496
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors
heatmaps
heatmap.2
updated 12 months ago by
Konstantinos Yeles
▴ 80 • written 13 months ago by
Sooni
▴ 10
0
votes
1
reply
604
views
Heatmap of two conditions from the normalized gene count data
GeneExpression
heatmaps
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
Amazing570
• 0
0
votes
2
replies
855
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou
heatmaps
CyTOFpower
cytofWorkflow
13 months ago
shuangshuang
• 0
0
votes
0
replies
794
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
14 months ago
gianni.drm
• 0
0
votes
1
reply
612
views
struggling to create a heatmap
DESeq2
heatmaps
updated 14 months ago by
ATpoint
★ 4.0k • written 14 months ago by
m-bihie
▴ 10
2
votes
3
replies
939
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma
heatmaps
ComplexHeatmap
updated 14 months ago by
elefth.pavlos
▴ 40 • written 14 months ago by
Sooni
▴ 10
2
votes
2
replies
604
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2
heatmaps
15 months ago
Sooni
▴ 10
2
votes
5
replies
3.0k
views
How to identify top most variable genes from log2 normalized data?
supervised
edgeR
variance
RNASeq
heatmaps
updated 14 months ago by
Gordon Smyth
50k • written 15 months ago by
mohammedtoufiq91
▴ 10
2
votes
5
replies
1.5k
views
ComplexHeatmap - z-score color coding failed
heatmaps
ComplexHeatmap
16 months ago
Katharina
• 0
0
votes
1
reply
2.0k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 18 months ago by
Michael Love
41k • written 18 months ago by
Chiara
• 0
0
votes
3
replies
1.1k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2
DESEQ2
tximeta
SummarizedExperiment
heatmaps
updated 19 months ago by
James W. MacDonald
65k • written 19 months ago by
uhlkatie
• 0
0
votes
1
reply
1.4k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R
heatmaps
ComplexHeatmap
Heatma
updated 19 months ago by
Zuguang Gu
▴ 260 • written 20 months ago by
תום
• 0
1
vote
1
reply
970
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat
heatmaps
updated 21 months ago by
James W. MacDonald
65k • written 22 months ago by
MauriAndres
• 0
0
votes
2
replies
3.7k
views
Scaling for p.heatmap
heatmaps
pheatmap
scaling
22 months ago
Bhavana
• 0
0
votes
3
replies
1.2k
views
Persisting error in making a heatmap
heatmaps
gplots
22 months ago
beslinail
• 0
1
vote
1
reply
761
views
Method for generating heatmap of overlapping DEGs?
heatm
heatmaps
updated 2.0 years ago by
James W. MacDonald
65k • written 2.0 years ago by
axe880
• 0
0
votes
1
reply
1.0k
views
Help me do a gene enrichment analysis
DESeq2
topGO
heatmaps
updated 2.6 years ago by
Guandong Shang
▴ 40 • written 2.6 years ago by
anasjamshed1994
• 0
0
votes
2
replies
1.7k
views
PCA and heatmaps: most variable genes selection
DESeq2
ExpressionData
heatmaps
pca
2.8 years ago
Clara
• 0
0
votes
1
reply
2.4k
views
Can you colour dendrogram branch clusters in pheatmap?
R
heatmaps
pheatmap
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
trichorico
▴ 10
1
vote
1
reply
821
views
PCA rand heatmap of raw data
DESeq2
DiffSeq
PrincipalComponent
rlog
heatmaps
updated 3.1 years ago by
Michael Love
41k • written 3.1 years ago by
Fischer-philipp
▴ 30
4
votes
5
replies
1.3k
views
DEseq2 results
heatmaps
DEGs
PCA
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
MOHAMMAD
• 0
0
votes
0
replies
711
views
How to generate input file for Bioconductor package heatmaps
heatmaps
input file
updated 5.1 years ago by
James W. MacDonald
65k • written 5.1 years ago by
bony.dekumar
• 0
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Answer: OrgDb for maize
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Guido Hooiveld
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I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
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Thanks Peter!
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sropri
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Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
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Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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