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629
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Error when trying to create a heatmap with DESeq2
Heatmap
RNA-seqanalysis
heatmaps
DESeq2
updated 5 months ago by
Basti
▴ 770 • written 5 months ago by
langziv
• 0
0
votes
1
reply
798
views
edgeR heatmap construction and interpretation
heatmaps
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
ulin.1
• 0
0
votes
3
replies
565
views
Installing Gpart
gpart
heat
heatmaps
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Benjamin
• 0
0
votes
2
replies
588
views
Drawing a heatmap with only limited genes
heatmaps
updated 10 months ago by
sayite3688
• 0 • written 10 months ago by
dania.khalid
• 0
1
vote
1
reply
501
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors
heatmaps
heatmap.2
updated 12 months ago by
Konstantinos Yeles
▴ 80 • written 13 months ago by
Sooni
▴ 10
0
votes
1
reply
610
views
Heatmap of two conditions from the normalized gene count data
GeneExpression
heatmaps
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
Amazing570
• 0
0
votes
2
replies
863
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou
heatmaps
CyTOFpower
cytofWorkflow
13 months ago
shuangshuang
• 0
0
votes
0
replies
799
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
14 months ago
gianni.drm
• 0
0
votes
1
reply
618
views
struggling to create a heatmap
DESeq2
heatmaps
updated 14 months ago by
ATpoint
★ 4.0k • written 14 months ago by
m-bihie
▴ 10
2
votes
3
replies
956
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma
heatmaps
ComplexHeatmap
updated 15 months ago by
elefth.pavlos
▴ 40 • written 15 months ago by
Sooni
▴ 10
2
votes
2
replies
607
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2
heatmaps
15 months ago
Sooni
▴ 10
2
votes
5
replies
3.1k
views
How to identify top most variable genes from log2 normalized data?
supervised
edgeR
variance
RNASeq
heatmaps
updated 14 months ago by
Gordon Smyth
50k • written 16 months ago by
mohammedtoufiq91
▴ 10
2
votes
5
replies
1.5k
views
ComplexHeatmap - z-score color coding failed
heatmaps
ComplexHeatmap
16 months ago
Katharina
• 0
0
votes
1
reply
2.0k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 18 months ago by
Michael Love
41k • written 18 months ago by
Chiara
• 0
0
votes
3
replies
1.1k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2
DESEQ2
tximeta
SummarizedExperiment
heatmaps
updated 19 months ago by
James W. MacDonald
65k • written 19 months ago by
uhlkatie
• 0
0
votes
1
reply
1.5k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R
heatmaps
ComplexHeatmap
Heatma
updated 20 months ago by
Zuguang Gu
▴ 260 • written 20 months ago by
תום
• 0
1
vote
1
reply
974
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat
heatmaps
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
MauriAndres
• 0
0
votes
2
replies
3.7k
views
Scaling for p.heatmap
heatmaps
pheatmap
scaling
22 months ago
Bhavana
• 0
0
votes
3
replies
1.2k
views
Persisting error in making a heatmap
heatmaps
gplots
22 months ago
beslinail
• 0
1
vote
1
reply
763
views
Method for generating heatmap of overlapping DEGs?
heatm
heatmaps
updated 2.0 years ago by
James W. MacDonald
65k • written 2.0 years ago by
axe880
• 0
0
votes
1
reply
1.0k
views
Help me do a gene enrichment analysis
DESeq2
topGO
heatmaps
updated 2.6 years ago by
Guandong Shang
▴ 40 • written 2.6 years ago by
anasjamshed1994
• 0
0
votes
2
replies
1.7k
views
PCA and heatmaps: most variable genes selection
DESeq2
ExpressionData
heatmaps
pca
2.9 years ago
Clara
• 0
0
votes
1
reply
2.4k
views
Can you colour dendrogram branch clusters in pheatmap?
R
heatmaps
pheatmap
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
trichorico
▴ 10
1
vote
1
reply
825
views
PCA rand heatmap of raw data
DESeq2
DiffSeq
PrincipalComponent
rlog
heatmaps
updated 3.1 years ago by
Michael Love
41k • written 3.1 years ago by
Fischer-philipp
▴ 30
4
votes
5
replies
1.3k
views
DEseq2 results
heatmaps
DEGs
PCA
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
MOHAMMAD
• 0
0
votes
0
replies
712
views
How to generate input file for Bioconductor package heatmaps
heatmaps
input file
updated 5.1 years ago by
James W. MacDonald
65k • written 5.1 years ago by
bony.dekumar
• 0
26 results • Page
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Recent ...
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Comment: Methylation Analysis experiment design using Limma
by
hortense96
• 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates
by
hortense96
• 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Answer: minfi::read.metharray.exp
by
Basti
▴ 770
Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…
Comment: DESeq2 - dispersion estimation when there is none
by
WardDeb
• 0
Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
• 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Votes
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
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