Bioconductor Heatplus

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heatmap.2 pheatmap complexheatmap heatplus

updated 7.1 years ago by Gavin Kelly ▴ 680 • written 7.1 years ago by Bogdan ▴ 670

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heatmap heatplus

8.2 years ago Bernal-Mizrachi, Leon ▴ 50

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Heatplus Heatplus

updated 10.9 years ago by Dan Tenenbaum ★ 8.2k • written 10.9 years ago by Adriana Munoz ▴ 100

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Heatplus Heatplus

updated 11.2 years ago by Alexander Ploner ▴ 10 • written 11.2 years ago by Guest User ★ 13k

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Heatplus Heatplus

11.4 years ago Hoyles, Lesley ▴ 50

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Annotation GO yeast2 cdf Heatplus Annotation GO yeast2 cdf Heatplus

15.7 years ago lgautier@altern.org ▴ 950

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Annotation GO yeast2 cdf Heatplus Annotation GO yeast2 cdf Heatplus

15.7 years ago Hui-Yi Chu ▴ 160

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Microarray Cancer Heatplus Microarray Cancer Heatplus

16.0 years ago Gregory Warnes ▴ 50

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Heatplus Heatplus

updated 16.1 years ago by James W. MacDonald 65k • written 16.1 years ago by s.khalid@qmul.ac.uk ▴ 50

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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