Bioconductor Heatplus

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9.2k

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heatmap.2 pheatmap complexheatmap heatplus

updated 7.1 years ago by Gavin Kelly ▴ 680 • written 7.1 years ago by Bogdan ▴ 670

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4.6k

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Heatplus Heatplus

updated 16.1 years ago by James W. MacDonald 65k • written 16.1 years ago by s.khalid@qmul.ac.uk ▴ 50

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870

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Annotation GO yeast2 cdf Heatplus Annotation GO yeast2 cdf Heatplus

15.7 years ago Hui-Yi Chu ▴ 160

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1.1k

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heatmap heatplus

8.2 years ago Bernal-Mizrachi, Leon ▴ 50

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912

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Heatplus Heatplus

11.4 years ago Hoyles, Lesley ▴ 50

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2.0k

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Heatplus Heatplus

updated 11.1 years ago by Alexander Ploner ▴ 10 • written 11.1 years ago by Guest User ★ 13k

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1.3k

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Heatplus Heatplus

updated 10.9 years ago by Dan Tenenbaum ★ 8.2k • written 10.9 years ago by Adriana Munoz ▴ 100

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858

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Annotation GO yeast2 cdf Heatplus Annotation GO yeast2 cdf Heatplus

15.7 years ago lgautier@altern.org ▴ 950

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1.2k

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Microarray Cancer Heatplus Microarray Cancer Heatplus

16.0 years ago Gregory Warnes ▴ 50

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Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

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Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

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Popular Question to W. Evan Johnson ▴ 850

Popular Question to Alejandro Reyes ★ 1.9k