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Gene expression analysis and network construction for bachelor thesis
bachelorthesis
help
HELP
updated 7 months ago by
DrFizz
• 0 • written 7 months ago by
melander
• 0
2
votes
6
replies
1.3k
views
Help me find the bug
DESeq2
HELP
13 months ago
Michael
• 0
0
votes
4
replies
1.1k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 13 months ago by
Basti
▴ 750 • written 13 months ago by
Michael
• 0
0
votes
2
replies
687
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Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
17 months ago
michela
▴ 20
3
votes
4
replies
1.2k
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why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
michela
▴ 20
0
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10
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1.5k
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Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
17 months ago
michela
▴ 20
0
votes
1
reply
551
views
Data visualization
HELP
Data
updated 19 months ago by
Guido Hooiveld
★ 3.9k • written 19 months ago by
mcclurejenniferc
• 0
2
votes
4
replies
1.7k
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STRINGdb string_db$map error
STRINGdb
HELP
updated 13 months ago by
Rodrigo
▴ 10 • written 2.1 years ago by
Jessica
▴ 10
1
vote
2
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2.3k
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ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
2.4 years ago
lexi.kellington
• 0
1
vote
9
replies
4.0k
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DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 22 months ago by
Sanatan
• 0 • written 3.0 years ago by
dorina.jamniczky
• 0
3
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4
replies
1.3k
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GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
3.0 years ago
hgalmoore
• 0
0
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1
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2.0k
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setup microbiome error
help
software error
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
mafusa20
• 0
0
votes
2
replies
987
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Design matrix choice for time series experiment using limma
limma
time series
help
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
rm1238
• 0
1
vote
4
replies
5.8k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 7.1 years ago by
Guangchuang Yu
★ 1.2k • written 7.1 years ago by
Mataivic
• 0
4
votes
5
replies
2.4k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 7.7 years ago by
Aaron Lun
★ 28k • written 7.7 years ago by
knipehf
• 0
0
votes
7
replies
1.8k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
7.8 years ago
fischer87
• 0
0
votes
2
replies
1.3k
views
help me to analysis my data
limma
help
updated 8.3 years ago by
svlachavas
▴ 830 • written 8.3 years ago by
libya.tahani
• 0
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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