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DESeq2 with interest only for 1 gene
R deseq2 differential gene expression help
7.8 years ago fischer87 • 0
4
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5
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2.5k
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edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 7.8 years ago by ★ 28k • written 7.8 years ago by • 0
1
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4
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5.9k
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ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler input files error help
updated 7.1 years ago by ★ 1.2k • written 7.1 years ago by • 0
0
votes
2
replies
997
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Design matrix choice for time series experiment using limma
limma time series help
updated 5.3 years ago by ★ 28k • written 5.3 years ago by • 0
0
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2
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1.3k
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help me to analysis my data
limma help
updated 8.4 years ago by ▴ 830 • written 8.4 years ago by • 0
1
vote
9
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4.1k
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DESeq problems
help DESeq2 DESeqDataSetFromMatrix rownames
updated 22 months ago by • 0 • written 3.0 years ago by • 0
0
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1
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562
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Data visualization
HELP Data
updated 19 months ago by ★ 3.9k • written 19 months ago by • 0
0
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10
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1.5k
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Peak annotation
HELP ChIC.data PeakDetection ChipOnChipData
18 months ago michela ▴ 20
3
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4
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1.3k
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GEO + RNA-seq. Total Newbie.
RNASeqData RNASeq GEO RNASeqR HELP
3.0 years ago hgalmoore • 0
2
votes
4
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1.7k
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STRINGdb string_db$map error
STRINGdb HELP
updated 14 months ago by ▴ 10 • written 2.1 years ago by ▴ 10
3
votes
4
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1.2k
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why makeGRangesFromDataFrame don't do the IRange
HELP HelloRanges
updated 18 months ago by 65k • written 18 months ago by ▴ 20
1
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2
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2.4k
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ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP ChIPpeakAnno
2.4 years ago lexi.kellington • 0
2
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6
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1.3k
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Help me find the bug
DESeq2 HELP
14 months ago Michael • 0
0
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4
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1.2k
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Volcano plot becomes flipped when I add a third condition
DESeq2 volcanoplot deseq HELP contrast
updated 14 months ago by ▴ 770 • written 14 months ago by • 0
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1
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2.0k
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setup microbiome error
help software error
updated 5.3 years ago by 25k • written 5.3 years ago by • 0
0
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1
reply
317
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Gene expression analysis and network construction for bachelor thesis
bachelorthesis help HELP
updated 8 months ago by • 0 • written 8 months ago by • 0
0
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2
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704
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Empty matrix
ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene
18 months ago michela ▴ 20
17 results • Page 1 of 1
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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