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bachelorthesis help HELP

updated 8 months ago by DrFizz • 0 • written 8 months ago by melander • 0

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HELP Data

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STRINGdb HELP

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HELP ChIPpeakAnno

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help DESeq2 DESeqDataSetFromMatrix rownames

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help software error

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clusterprofiler input files error help

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edger differential gene expression without replicate nested design help

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by knipehf • 0

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R deseq2 differential gene expression help

7.8 years ago fischer87 • 0

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limma help

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17 results • Page 1 of 1

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Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by sredemption • 0

Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…

Answer: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

The genes are automatically ordered within `fgsea`, there is no need to sort them manually.

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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

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