Showing : hgu133a • reset
2
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hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
readaffy frma affy package installation hgu133a
6.1 years ago Chris Mancuso • 0
2
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1
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1.0k
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How to get chip information from annotation databases
bioconductor annotationdata hgu133a
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 260
2
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2
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1.2k
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around 2000 Affy probe set IDs cannot be mapped with Ensembl IDs by BiomaRt
microarray annotation biomart hgu133a
updated 6.9 years ago by 65k • written 6.9 years ago by • 0
2
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3
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1.4k
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unusal expression level values after normalization in Affymetrix microarray experiment
microarray gcrma affy hgu133a normalization
updated 7.1 years ago by 50k • written 7.1 years ago by ▴ 50
0
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4
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1.3k
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TimmR error for hgu133a.db
software error annotate hgu133a
updated 7.1 years ago by 65k • written 7.1 years ago by • 0
6
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5
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2.6k
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Is filtering necessary to extract significant DE genes with limma ?
hgu133a
updated 8.0 years ago by 50k • written 8.0 years ago by ▴ 40
1
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3
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1.9k
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Analyse of HGU133 set / Merge ExpressionSet
affy hgu133a hgu133b
updated 8.1 years ago by 65k • written 8.1 years ago by ▴ 40
0
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1
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1.7k
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Reading in and normalising ht-hgu133a and hgu133a files together
hgu133a rma normalization affy
updated 9.0 years ago by ▴ 830 • written 9.0 years ago by • 0
0
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5
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How to do Affy ST array analysis
Annotation Normalization hgu133a probe affy oligo Annotation Normalization hgu133a probe
updated 8.9 years ago by • 0 • written 10.0 years ago by ★ 13k
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[phenoTest package]: gsea.kegg error with absVals parameter
Pathways GO hgu133a hgu95av2 phenoTest Pathways GO hgu133a hgu95av2 phenoTest
10.1 years ago Kostas Kerkentzes ▴ 10
0
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1
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2.6k
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annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray Annotation hgu133a hgu133plus2 cdf Microarray Annotation hgu133a hgu133plus2
updated 10.4 years ago by ★ 3.9k • written 10.4 years ago by ▴ 10
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0
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QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
10.6 years ago b a ▴ 40
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0
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QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
10.6 years ago b a ▴ 40
0
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1
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1.5k
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SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
Normalization hgu133a probe affy PROcess SCAN.UPC Normalization hgu133a probe affy
updated 11.0 years ago by ▴ 20 • written 11.0 years ago by ▴ 590
0
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1
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1.4k
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SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
hgu133a probe affy SCAN.UPC hgu133a probe affy SCAN.UPC
updated 11.1 years ago by ▴ 20 • written 11.1 years ago by ▴ 590
0
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2
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1.3k
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results.summary function returns error
Microarray Annotation hgu133a simpleaffy Microarray Annotation hgu133a simpleaffy
updated 11.4 years ago by 65k • written 11.4 years ago by ★ 13k
0
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2
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retrieve expression of all probes in the probe set
hgu133a probe hgu133a probe
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 240
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1
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1.2k
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Annotate Affy SNP6 probes in bioc
hgu133a annotate hgu133a annotate
updated 11.6 years ago by 6.7k • written 11.6 years ago by ▴ 170
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0
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1.4k
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Gviz : UcscTrack ..
GO hgu133a GO hgu133a
11.8 years ago Tim Smith ★ 1.1k
0
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5
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2.2k
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ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.1 years ago by ▴ 110 • written 12.0 years ago by ▴ 760
0
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4
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1.4k
views
errors in FRMA
Annotation hgu133a2 hgu133a frma Annotation hgu133a2 hgu133a frma
updated 12.0 years ago by ▴ 830 • written 12.0 years ago by ▴ 510
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3
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1.4k
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combining hgu133a and hgu133b
hgu133a hgu133b hgu133plus2 hgu133a hgu133b hgu133plus2
12.0 years ago Mayte Suarez-Farinas ▴ 510
1
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0
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1.1k
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problem in read in file with GEOquery library
hgu133a GEOquery hgu133a GEOquery
12.7 years ago Sean Davis 21k
1
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0
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1.1k
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problem in read in file with GEOquery library
hgu133a GEOquery hgu133a GEOquery
12.7 years ago Zhe Liu ▴ 90
0
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5
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1.6k
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R crashes with GEOmetadb
hgu133a hgu133a
updated 12.8 years ago by 21k • written 12.8 years ago by ★ 3.9k
0
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2
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1.9k
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ArrayExpress: missing cdf environment!
Cancer hgu133a cdf ArrayExpress Cancer hgu133a cdf ArrayExpress
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 110
0
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1
reply
831
views
How to get all qualified GEO Platform records in R
hgu133a GEOquery hgu133a GEOquery
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 240
0
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6
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1.3k
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mapping probe sets from yeast2 array to probe sets in hgu133A
hgu133a yeast2 probe hgu133a yeast2 probe
updated 13.7 years ago by ▴ 60 • written 13.7 years ago by ▴ 350
0
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1
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826
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phenotypic information of ALLMLL data set
hgu133a hgu133a
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 840
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1
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1.5k
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CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 14.3 years ago by ★ 2.9k • written 14.3 years ago by ★ 1.1k
0
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0
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845
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lambda and other questions related to siggenes
GO hgu133a siggenes GO hgu133a siggenes
14.4 years ago John Lande ▴ 280
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1
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1.7k
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getBM function in biomaRt
SNP GO hgu133a SNP GO hgu133a
updated 14.4 years ago by ▴ 600 • written 14.4 years ago by ★ 1.1k
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FW: function error for "hyperGTest" in Category package
Annotation GO hgu133a probe GOstats Category Annotation GO hgu133a probe GOstats
updated 14.5 years ago by 25k • written 14.5 years ago by ▴ 60
0
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2
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goTools package, ontoCompare error
Microarray GO hgu133a Microarray GO hgu133a
updated 14.5 years ago by 65k • written 14.5 years ago by ▴ 20
0
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1
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1.0k
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question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.5 years ago by ★ 7.4k • written 14.5 years ago by ▴ 50
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2
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biomaRt query
GO hgu133a GO hgu133a
updated 14.5 years ago by ▴ 600 • written 14.5 years ago by ★ 1.1k
0
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2
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963
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Extract top-ranked genes from model fit
Annotation GO hgu133a Annotation GO hgu133a
updated 14.5 years ago by 65k • written 14.5 years ago by ▴ 310
0
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3
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Examples outdated in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor"
Annotation GO hgu133a Annotation GO hgu133a
updated 14.7 years ago by ▴ 940 • written 14.7 years ago by ★ 2.0k
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1
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977
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Bug in metaArray package
GO hgu133a MergeMaid metaArray GO hgu133a MergeMaid metaArray
updated 14.8 years ago by 25k • written 14.8 years ago by ▴ 500
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2
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how to create an affybatch
Normalization Regression hgu133a probe Normalization Regression hgu133a probe
14.8 years ago Venkat Sundar ▴ 30
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0
replies
942
views
KEGGSOAP package: I can't retrieve KEGG pathway diagrams
hgu133a KEGGSOAP hgu133a KEGGSOAP
14.8 years ago Paolo Sonego ▴ 140
0
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1
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1.1k
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question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.9 years ago by ▴ 60 • written 14.9 years ago by ▴ 50
0
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0
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686
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MAS5 to selected average
hgu133a affy hgu133a affy
14.9 years ago James W. MacDonald 65k
0
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0
replies
650
views
MAS5 to selected average
hgu133a hgu133a
14.9 years ago Dr Gyorffy Balazs ▴ 320
0
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3
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1.7k
views
Can BioC still convert exprSet to ExpressionSet?
hgu133a hgu133plus2 mouse4302 convert hgu133a hgu133plus2 mouse4302 convert
updated 15.0 years ago by 25k • written 15.0 years ago by ▴ 100
1
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3
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1.3k
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how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation hgu133a hgu133plus2 probe Annotation hgu133a hgu133plus2 probe
updated 15.0 years ago by ★ 6.5k • written 15.0 years ago by ▴ 350
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0
replies
888
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Bioconductor package to map probe set ids from one chip to another chip
Annotation GO Cancer hgu133a hgu95av2 probe Biostrings Annotation GO Cancer hgu133a
15.0 years ago Hervé Pagès 16k
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9
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1.5k
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Appropriate Probe annotation for HT-HGU133A chips
hgu133a hgu133plus2 cdf probe hgu133a hgu133plus2 cdf probe
updated 15.0 years ago by 65k • written 15.0 years ago by ▴ 30
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2
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1.5k
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KEGGgraph, error
Organism hgu133a KEGGgraph Organism hgu133a KEGGgraph
updated 15.0 years ago by ▴ 20 • written 15.0 years ago by ▴ 380
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1.7k
views
Limma: 2 venn diagrams on single page
hgu133a limma hgu133a limma
updated 15.1 years ago by 65k • written 15.1 years ago by ▴ 120
50 results • Page 1 of 1
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Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
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C: null model and DEXSeqDataSet object in DEXSEQ
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A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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