Showing : hgu133a • reset
6
votes
5
replies
2.6k
views
Is filtering necessary to extract significant DE genes with limma ?
hgu133a
updated 8.0 years ago by 50k • written 8.0 years ago by ▴ 40
2
votes
3
replies
1.4k
views
unusal expression level values after normalization in Affymetrix microarray experiment
microarray gcrma affy hgu133a normalization
updated 7.0 years ago by 50k • written 7.1 years ago by ▴ 50
2
votes
2
replies
1.2k
views
around 2000 Affy probe set IDs cannot be mapped with Ensembl IDs by BiomaRt
microarray annotation biomart hgu133a
updated 6.9 years ago by 65k • written 6.9 years ago by • 0
2
votes
1
reply
1.0k
views
How to get chip information from annotation databases
bioconductor annotationdata hgu133a
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 260
2
votes
3
replies
2.4k
views
hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
readaffy frma affy package installation hgu133a
6.1 years ago Chris Mancuso • 0
1
vote
0
replies
1.1k
views
problem in read in file with GEOquery library
hgu133a GEOquery hgu133a GEOquery
12.6 years ago Sean Davis 21k
1
vote
3
replies
1.3k
views
how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation hgu133a hgu133plus2 probe Annotation hgu133a hgu133plus2 probe
updated 15.0 years ago by ★ 6.5k • written 15.0 years ago by ▴ 350
1
vote
3
replies
1.9k
views
Analyse of HGU133 set / Merge ExpressionSet
affy hgu133a hgu133b
updated 8.0 years ago by 65k • written 8.0 years ago by ▴ 40
1
vote
0
replies
1.1k
views
problem in read in file with GEOquery library
hgu133a GEOquery hgu133a GEOquery
12.6 years ago Zhe Liu ▴ 90
0
votes
1
reply
606
views
Environments in affy data packages?
Annotation hgu133a affy Annotation hgu133a affy
updated 21.1 years ago by ★ 2.9k • written 21.1 years ago by ▴ 60
0
votes
0
replies
742
views
RE: gcrma
hgu133a affycomp gcrma PROcess hgu133a affycomp gcrma PROcess
20.4 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
1
reply
960
views
gcrma
hgu133a affycomp gcrma PROcess hgu133a affycomp gcrma PROcess
updated 20.4 years ago by ★ 2.3k • written 20.4 years ago by ▴ 270
0
votes
1
reply
614
views
non appearing AffyIDs cColor
hgu133a hgu133a
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 250
0
votes
1
reply
905
views
gcrma memory problems in R1.8.1 and R1.9.0-devel
hgu133a gcrma hgu133a gcrma
updated 20.3 years ago by ▴ 720 • written 20.3 years ago by ★ 1.4k
0
votes
1
reply
752
views
affy batch questions
hgu133a hgu133b hgu133a hgu133b
updated 21.3 years ago by ★ 13k • written 21.3 years ago by ▴ 20
0
votes
5
replies
2.2k
views
ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.0 years ago by ▴ 110 • written 11.9 years ago by ▴ 760
0
votes
1
reply
861
views
comparing hgu133a chips with 3mg total RNA to 1mg total RNA
hgu133a gcrma hgu133a gcrma
updated 20.6 years ago by ★ 2.3k • written 20.6 years ago by ★ 1.4k
0
votes
1
reply
705
views
large amount of slides/ out of memory
hgu133a gcrma hgu133a gcrma
updated 19.9 years ago by 65k • written 19.9 years ago by ▴ 210
0
votes
3
replies
852
views
Problems using GO 1.6.0 in Windows
GO hgu133a hgu95av2 GO hgu133a hgu95av2
updated 19.9 years ago by ★ 2.9k • written 19.9 years ago by ▴ 550
0
votes
5
replies
2.0k
views
Combining HGU133A & HGU133B data
hgu133a hgu133b hgu133a hgu133b
updated 20.6 years ago by ★ 1.1k • written 20.6 years ago by ▴ 80
0
votes
5
replies
909
views
How to use datapackage homology
hgu133a rae230a hgu133a rae230a
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 110
0
votes
1
reply
858
views
Plotting together data from hgu133a and b
hgu133a hgu133b geneplotter hgu133a hgu133b geneplotter
updated 19.7 years ago by ★ 5.5k • written 19.7 years ago by ▴ 500
0
votes
1
reply
846
views
annotation - 1 probe with 2 UG ??
Transcription Annotation GO hgu133a probe Transcription Annotation GO hgu133a probe
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 300
0
votes
1
reply
685
views
hgu133aPMID redundancy
Annotation GO hgu133a Annotation GO hgu133a
updated 19.6 years ago by ★ 2.9k • written 19.6 years ago by ▴ 30
0
votes
0
replies
691
views
add a gene symbol colums in an exprSet or a matrix / infinite recursion error message
hgu133a hgu133a
19.6 years ago Florence Combes ▴ 120
0
votes
1
reply
931
views
add a gene symbol colums in an exprSet or a matrix / infinite recursion error message
hgu133a hgu133a
updated 19.6 years ago by ▴ 120 • written 19.6 years ago by ★ 5.5k
0
votes
1
reply
1.0k
views
combining hgu133a hgu133b
hgu133a hgu133b annotate hgu133a hgu133b annotate
updated 19.4 years ago by ★ 1.8k • written 19.4 years ago by ▴ 250
0
votes
1
reply
923
views
MM > PM intensities
hgu133a hgu133a
updated 19.3 years ago by ★ 13k • written 19.3 years ago by ★ 1.3k
0
votes
0
replies
871
views
Please help: AffylmGUI errors (more detail)
Normalization hgu133a affylmGUI ASSIGN Normalization hgu133a affylmGUI ASSIGN
19.2 years ago Aaron Hamilton ▴ 30
0
votes
0
replies
1.0k
views
gcrma problem caused by using updated new CDF and probesequence?
Normalization hgu133a hgu95a cdf probe affy gcrma PROMISE Normalization hgu133a hgu95a
16.6 years ago Yan Zhang ▴ 130
0
votes
3
replies
1.1k
views
missing GO identifier in hgu133a GO
GO hgu133a hgu133b GO hgu133a hgu133b
updated 21.5 years ago by ★ 5.5k • written 21.5 years ago by ▴ 20
0
votes
1
reply
1.7k
views
Problem reading CEL files
Normalization hgu133a affy Normalization hgu133a affy
20.0 years ago Xia Han ▴ 80
0
votes
1
reply
857
views
affycomp hgu133 assessment error
hgu133a hgu95a affycomp hgu133a hgu95a affycomp
18.8 years ago Ariel Chernomoretz ▴ 380
0
votes
2
replies
875
views
error with results.summary in simpleaffy
Cancer hgu133a probe Cancer hgu133a probe
18.8 years ago Jack Zhu ▴ 30
0
votes
0
replies
666
views
Dealing with artifacts on Affy chips.
Genetics hgu133a Genetics hgu133a
20.0 years ago Gareth Hughes ▴ 20
0
votes
1
reply
706
views
hgu133a cdf package
hgu133a cdf hgu133a cdf
updated 20.8 years ago by ★ 3.9k • written 20.8 years ago by ▴ 720
0
votes
4
replies
1.2k
views
error with results.summary in simpleaffy
Annotation Cancer hgu133a probe simpleaffy Annotation Cancer hgu133a probe simpleaffy
updated 18.8 years ago by ▴ 160 • written 18.8 years ago by ★ 1.1k
0
votes
1
reply
849
views
common genes between hgu133a and hu6800
Microarray hgu133a hu6800 Microarray hgu133a hu6800
updated 18.8 years ago by ▴ 420 • written 18.8 years ago by ▴ 360
0
votes
1
reply
957
views
filtering for present calls
hgu133a gcrma hgu133a gcrma
updated 18.8 years ago by ▴ 280 • written 18.8 years ago by ▴ 10
0
votes
1
reply
844
views
cdfName/annotation variants for hgu133a?
Annotation hgu133a hgu133b Annotation hgu133a hgu133b
updated 18.7 years ago by 65k • written 18.7 years ago by ▴ 40
0
votes
0
replies
742
views
want to compare hgu133a and hgu133plus2
hgu133a hgu133plus2 affy Resourcerer hgu133a hgu133plus2 affy Resourcerer
18.6 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
579
views
MixtureCDF
Cancer hgu133a2 hgu133a cdf PROcess Cancer hgu133a2 hgu133a cdf PROcess
18.3 years ago Jack Zhu ▴ 30
0
votes
0
replies
735
views
A questions related to affymetrix chip normalizationfrom multiple platform
hgu133a hgu133b gcrma hgu133a hgu133b gcrma
18.0 years ago Li, Aiguo NIH/NCI ▴ 110
0
votes
0
replies
679
views
problem with moe430a version 1.12.0?
hgu133a hgu133plus2 moe430a moe430b rae230b probe hgu133a hgu133plus2 moe430a moe430b
18.0 years ago MARIA STALTERI ▴ 160
0
votes
0
replies
606
views
alternative CDF
hgu133a hgu133plus2 cdf hgu133a hgu133plus2 cdf
17.9 years ago Tarca, Adi ▴ 570
0
votes
0
replies
1.1k
views
[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP Microarray Annotation GO Network Clustering Survival Cancer hgu133a cdf probe affy
17.8 years ago Todd Nick ▴ 10
0
votes
0
replies
738
views
combined Affybatch and mas5
hgu133a cdf affy matchprobes hgu133a cdf affy matchprobes
17.8 years ago Lewin Eisele ▴ 10
0
votes
0
replies
832
views
breast tissue cel files
hgu133a ArrayExpress hgu133a ArrayExpress
17.8 years ago Rafael A. Irizarry ★ 2.3k
0
votes
5
replies
1.3k
views
Missing chromosomal locations in hgu133a package
hgu133a AnnBuilder safe hgu133a AnnBuilder safe
updated 17.8 years ago by ▴ 870 • written 17.8 years ago by ▴ 60
0
votes
1
reply
706
views
justMAS reliability
hgu133a cdf hgu133a cdf
updated 18.8 years ago by ★ 1.1k • written 18.8 years ago by ▴ 30
50 results • Page 1 of 1
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
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Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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