Bioconductor Hgu133plus2.db

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468

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affydata hgu133plus2.db AffymetrixChip

updated 9 months ago by ATpoint ★ 4.0k • written 9 months ago by Matthias Munz ▴ 10

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477

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hgu133plus2hsentrezg.db chiptype chipster hgu133plus2.db AffymetrixChip

10 months ago alexia.brunel • 0

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956

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hgu133plus2.db limma DifferentialExpression affy

updated 2.9 years ago by Gordon Smyth 50k • written 2.9 years ago by Caamp • 0

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11k

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microarray software error hgu133plus2.db

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by naf • 0

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942

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aafTableAnn microarray annafy hgu133plus2.db

updated 5.3 years ago by James W. MacDonald 65k • written 5.3 years ago by maxininfa • 0

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annotation hgu133plus2.db affymetrix microarrays micorarray

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by 2323982403 ▴ 60

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hgu133plus2.db

updated 7.4 years ago by James W. MacDonald 65k • written 7.4 years ago by arkajyoti.bhattacharya • 0

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hgu133plus2.db

8.4 years ago matheus.cburger ▴ 20

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1.9k

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gene ID hgu133plus2.db

updated 9.4 years ago by James W. MacDonald 65k • written 9.4 years ago by nicolas.julien.jung • 0

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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