Bioconductor Hgu133plus2.db

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microarray software error hgu133plus2.db

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by naf • 0

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1.3k

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annotation hgu133plus2.db affymetrix microarrays micorarray

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by 2323982403 ▴ 60

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954

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hgu133plus2.db limma DifferentialExpression affy

updated 2.9 years ago by Gordon Smyth 50k • written 2.9 years ago by Caamp • 0

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941

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aafTableAnn microarray annafy hgu133plus2.db

updated 5.3 years ago by James W. MacDonald 65k • written 5.3 years ago by maxininfa • 0

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476

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hgu133plus2hsentrezg.db chiptype chipster hgu133plus2.db AffymetrixChip

10 months ago alexia.brunel • 0

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1.0k

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hgu133plus2.db

updated 7.4 years ago by James W. MacDonald 65k • written 7.4 years ago by arkajyoti.bhattacharya • 0

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1.2k

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hgu133plus2.db

8.4 years ago matheus.cburger ▴ 20

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468

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affydata hgu133plus2.db AffymetrixChip

updated 9 months ago by ATpoint ★ 4.0k • written 9 months ago by Matthias Munz ▴ 10

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1.9k

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gene ID hgu133plus2.db

updated 9.4 years ago by James W. MacDonald 65k • written 9.4 years ago by nicolas.julien.jung • 0

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

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DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

Answer: Citation for edgeR user guide

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Scholar to ATpoint ★ 4.0k