Bioconductor Hgu133plus2.db

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468

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affydata hgu133plus2.db AffymetrixChip

updated 9 months ago by ATpoint ★ 4.0k • written 9 months ago by Matthias Munz ▴ 10

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480

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hgu133plus2hsentrezg.db chiptype chipster hgu133plus2.db AffymetrixChip

10 months ago alexia.brunel • 0

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957

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hgu133plus2.db limma DifferentialExpression affy

updated 2.9 years ago by Gordon Smyth 50k • written 2.9 years ago by Caamp • 0

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11k

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microarray software error hgu133plus2.db

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by naf • 0

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942

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aafTableAnn microarray annafy hgu133plus2.db

updated 5.3 years ago by James W. MacDonald 65k • written 5.3 years ago by maxininfa • 0

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annotation hgu133plus2.db affymetrix microarrays micorarray

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by 2323982403 ▴ 60

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hgu133plus2.db

updated 7.4 years ago by James W. MacDonald 65k • written 7.4 years ago by arkajyoti.bhattacharya • 0

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hgu133plus2.db

8.4 years ago matheus.cburger ▴ 20

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1.9k

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gene ID hgu133plus2.db

updated 9.4 years ago by James W. MacDonald 65k • written 9.4 years ago by nicolas.julien.jung • 0

9 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0