Bioconductor Hgu133plus2.db

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annotation hgu133plus2.db affymetrix microarrays micorarray

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by 2323982403 ▴ 60

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aafTableAnn microarray annafy hgu133plus2.db

updated 5.3 years ago by James W. MacDonald 65k • written 5.3 years ago by maxininfa • 0

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hgu133plus2.db limma DifferentialExpression affy

updated 2.9 years ago by Gordon Smyth 50k • written 2.9 years ago by Caamp • 0

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hgu133plus2hsentrezg.db chiptype chipster hgu133plus2.db AffymetrixChip

10 months ago alexia.brunel • 0

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hgu133plus2.db

8.4 years ago matheus.cburger ▴ 20

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microarray software error hgu133plus2.db

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by naf • 0

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gene ID hgu133plus2.db

updated 9.4 years ago by James W. MacDonald 65k • written 9.4 years ago by nicolas.julien.jung • 0

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affydata hgu133plus2.db AffymetrixChip

updated 9 months ago by ATpoint ★ 4.0k • written 9 months ago by Matthias Munz ▴ 10

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hgu133plus2.db

updated 7.4 years ago by James W. MacDonald 65k • written 7.4 years ago by arkajyoti.bhattacharya • 0

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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