Showing : hgu133plus2 • reset
0
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7
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1.3k
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annaffy annotation problem (hgu133plus2)
Annotation hgu133plus2 probe annotate AnnBuilder Annotation hgu133plus2 probe annotate
updated 18.0 years ago by ▴ 170 • written 18.0 years ago by ▴ 430
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4
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1.6k
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hgu133plus2cdf cant download
normalization hgu133plus2
5.5 years ago marion.ryan • 0
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5
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810
views
Problems with homology packages
hgu133plus2 hgu133plus2
17.7 years ago Bosotti, Roberta [Nervianoms] ▴ 120
0
votes
5
replies
997
views
Annotation of Affymetrix hgu133plus2 chip
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 18.6 years ago by ★ 5.5k • written 18.6 years ago by ▴ 430
0
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4
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1.1k
views
Problems with hgu133plus2
Annotation hgu133plus2 Annotation hgu133plus2
18.1 years ago Vitalina Komashko ▴ 30
0
votes
3
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1.9k
views
BiocLite eror
Microarray hgu133plus2 Microarray hgu133plus2
updated 9.0 years ago by ★ 8.2k • written 9.0 years ago by ▴ 10
0
votes
5
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1.0k
views
multiple locations for probeset in hgu133plus2CHRLOC vs. UCSC PSL data
Alignment Annotation hgu133plus2 Alignment Annotation hgu133plus2
updated 14.3 years ago by 16k • written 14.3 years ago by ▴ 10
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votes
4
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961
views
hgu133plus2 GO issues
Annotation GO hgu133plus2 probe Annotation GO hgu133plus2 probe
updated 16.9 years ago by 62k • written 16.9 years ago by ▴ 320
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3
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3.1k
views
Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
Annotation hgu133plus2 biomaRt Annotation hgu133plus2 biomaRt
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 170
0
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3
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841
views
equivalent probes between microarray platforms
hgu133plus2 hu6800 hgu133plus2 hu6800
updated 18.4 years ago by ▴ 10 • written 18.4 years ago by ▴ 140
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6
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1.2k
views
outlier probes detection
hgu133plus2 hgu133plus2
updated 10.9 years ago by ▴ 210 • written 10.9 years ago by ▴ 240
0
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9
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1.1k
views
Appropriate Probe annotation for HT-HGU133A chips
hgu133a hgu133plus2 cdf probe hgu133a hgu133plus2 cdf probe
updated 13.9 years ago by 62k • written 13.9 years ago by ▴ 30
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5
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1.9k
views
ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 7.0 years ago by ▴ 110 • written 10.9 years ago by ▴ 760
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3
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847
views
R crashes after image array plots hgu133plus2 in R2.6.0
GUI hgu133plus2 affy limma affylmGUI GUI hgu133plus2 affy limma affylmGUI
updated 15.4 years ago by 25k • written 15.4 years ago by ★ 2.0k
0
votes
3
replies
978
views
Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2 affy limma gcrma hgu133plus2 affy limma gcrma
14.7 years ago Boel Brynedal ▴ 200
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votes
5
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1.9k
views
genefilter vs limma - many probes filtered
hgu133plus2 limma hgu133plus2 limma
updated 8.8 years ago by 47k • written 8.8 years ago by ★ 12k
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4
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1.3k
views
annotation package ?
Annotation hgu133plus2 Annotation hgu133plus2
updated 11.6 years ago by ★ 7.2k • written 11.6 years ago by ▴ 380
0
votes
3
replies
2.1k
views
HUgene 2.0 analyses with CEL files, oligo package
microarray annotation hgu133plus2 hugene20
8.0 years ago kanacska ▴ 10
0
votes
4
replies
979
views
Question about hgu133plus2cdf?
hgu133plus2 cdf affy hgu133plus2 cdf affy
11.0 years ago Fabrice Tourre ▴ 970
0
votes
7
replies
926
views
Affy chip annotation changes
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 12.4 years ago by 62k • written 12.4 years ago by ▴ 240
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2
replies
982
views
Help interpreting many contrasts in one contrast versus many individual contrast matrices
hgu133plus2 hgu133plus2
updated 10.3 years ago by ★ 2.0k • written 10.3 years ago by 47k
0
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2
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1.7k
views
HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO hgu133plus2 cdf affy limma
updated 8.5 years ago by 13k • written 8.5 years ago by ★ 12k
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3
replies
808
views
KEGGHyperGParams variable "mouse4302PATH2EG" was not found
Annotation GO hgu133plus2 moe430b mouse4302 Annotation GO hgu133plus2 moe430b mouse4302
updated 13.9 years ago by ★ 7.2k • written 13.9 years ago by ▴ 170
5
votes
4
replies
2.4k
views
How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf affymetrix microarrays hgu133plus2 affy
5.2 years ago rahil ▴ 30
0
votes
2
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2.0k
views
Duplicate probes
hgu133plus2 probe limma hgu133plus2 probe limma
updated 11.0 years ago by ★ 1.9k • written 11.0 years ago by ▴ 230
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4
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1.5k
views
hgu133plus2cdfSYMBOL not found
Cancer hgu133plus2 probe affy Cancer hgu133plus2 probe affy
updated 13.3 years ago by ▴ 630 • written 13.3 years ago by ▴ 60
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2
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1.2k
views
Analysing microarray data in BioConductor-The Knowledgeblog
hgu133plus2 getSymbol error in unlist microarray
8.0 years ago • updated 6.4 years ago IOM ▴ 20
0
votes
7
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1.3k
views
Missing GeneSymbol and Name information in TopTable
Annotation hgu133plus2 annaffy affylmGUI Annotation hgu133plus2 annaffy affylmGUI
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 40
0
votes
7
replies
937
views
Changes in annotations?
Annotation hgu133plus2 Biobase annotate Annotation hgu133plus2 Biobase annotate
13.7 years ago Alex Sanchez ▴ 90
0
votes
3
replies
2.0k
views
AFFX-BioB-3_at annotation
hgu133plus2 mouse4302 hgu133plus2 mouse4302
17.0 years ago Wu, Xiwei ▴ 350
0
votes
3
replies
880
views
problem about hgu133plus2 annotation
hgu133plus2 hgu133plus2
updated 12.7 years ago by 62k • written 12.7 years ago by ▴ 10
0
votes
2
replies
841
views
vector allocation error
hgu133plus2 gcrma hgu133plus2 gcrma
updated 16.8 years ago by ▴ 60 • written 16.8 years ago by ▴ 50
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4
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1.8k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 15.5 years ago by ▴ 500 • written 15.6 years ago by ★ 1.4k
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3
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1.4k
views
Can BioC still convert exprSet to ExpressionSet?
hgu133a hgu133plus2 mouse4302 convert hgu133a hgu133plus2 mouse4302 convert
updated 13.9 years ago by 25k • written 13.9 years ago by ▴ 100
0
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2
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805
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limma power question
hgu133plus2 limma hgu133plus2 limma
updated 18.4 years ago by 47k • written 18.4 years ago by ▴ 500
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4
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1.3k
views
about columm "size" in out of hyperGtest ( Gostat package)
GO hgu133plus2 affy GO hgu133plus2 affy
updated 6.1 years ago by ▴ 10 • written 13.8 years ago by ▴ 430
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2
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1.1k
views
problem with 2.0 cdf
hgu133plus2 cdf hgu133plus2 cdf
updated 13.7 years ago by ▴ 450 • written 13.7 years ago by ▴ 420
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2
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896
views
biomart doesn't annotate all the genes queried -CEACAM6
Cancer hgu133plus2 annotate affy biomaRt Cancer hgu133plus2 annotate affy biomaRt
14.5 years ago Julian Lee ▴ 140
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votes
4
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885
views
Affy output
Annotation GO hgu133a2 hgu133plus2 cdf Annotation GO hgu133a2 hgu133plus2 cdf
13.8 years ago Sarmah, Chintanu Kumar ▴ 70
0
votes
2
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815
views
Questions about gene identifiers and probesets regulation
Microarray hgu133plus2 limma Microarray hgu133plus2 limma
updated 15.6 years ago by 62k • written 15.6 years ago by ▴ 40
0
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2
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863
views
RMA of CEL files from different chip types
hgu133a hgu133plus2 hgu133a hgu133plus2
updated 15.5 years ago by ▴ 190 • written 15.5 years ago by ▴ 10
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2
replies
815
views
annotation
hgu133plus2 mgu74av2 annotate hgu133plus2 mgu74av2 annotate
updated 17.0 years ago by ▴ 300 • written 17.0 years ago by ▴ 320
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2
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1.3k
views
Package installation problem...
hgu133plus2 cdf hgu133plus2 cdf
updated 17.0 years ago by 62k • written 17.0 years ago by ▴ 10
0
votes
1
reply
636
views
annotation hgu133plus2 problem,
hgu133plus2 hgu133plus2
updated 17.1 years ago by 62k • written 17.1 years ago by ▴ 360
0
votes
1
reply
846
views
Annotation for Mouse 430 2.0 and Human Genome U133 Plus 2.0 Arrays
hgu133plus2 hgu133plus2
updated 14.2 years ago by ★ 7.2k • written 14.2 years ago by ▴ 140
0
votes
2
replies
603
views
adding annotation to exprSet
Annotation hgu133plus2 annotate affy limma Annotation hgu133plus2 annotate affy limma
17.6 years ago Andreas Zankl ▴ 80
0
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4
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1.1k
views
possible bug in getBM{biomaRt}
hgu133plus2 hgu133plus2
updated 14.0 years ago by ▴ 660 • written 14.0 years ago by ▴ 30
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1
reply
1.0k
views
error with affycomp package
hgu133plus2 affycomp hgu133plus2 affycomp
updated 10.9 years ago by 62k • written 10.9 years ago by ▴ 240
0
votes
2
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920
views
PieGlyph - labels do not show
hgu133plus2 Rgraphviz hgu133plus2 Rgraphviz
13.9 years ago Sim, Fraser ▴ 350
1
vote
3
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976
views
how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation hgu133a hgu133plus2 probe Annotation hgu133a hgu133plus2 probe
updated 13.9 years ago by 6.5k • written 13.9 years ago by ▴ 350
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Comment: minfi support of illumina Infinium methylationEPIC v2.0 by luca.s ▴ 40
Tank you James. All fine, but for preprocessIllumina, which apparently won't work
Comment: Time-course, comparison of two groups by boczniak767 ▴ 720
As an exercise I've tried to analyze simpler but similar experiment. The data is from real experiment (E-MTAB-11224) comparing wild type an…
Answer: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k
Asking for multiple things at once will tend to blow out your results, as you will get every possible combination. ``` > options(timeou…
Comment: Definition of disease_subtype abbreviations by Lucas Schiffer ▴ 240
Hi Sehyun, I do not know myself and can only find one reference in the [template.csv](https://github.com/waldronlab/curatedMetagenomicDataC…
Answer: Are polynomial contrasts for a time factor possible in DESeq2? by ATpoint ★ 2.4k
As you can use a model.matrix() as input for the design you can use a great variety of models. A great read is this work from Ritchie/Smyth…
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Answer: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Are polynomial contrasts for a time factor possible in DESeq2?
Are polynomial contrasts for a time factor possible in DESeq2?
Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
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