Showing : hgu133plus2 • reset
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operations are possible only for numeric, logical or complex types
hgu133plus2 pathview hgu133plus2 pathview
updated 9.8 years ago by ★ 1.6k • written 9.8 years ago by ★ 12k
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virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
9.3 years ago Guest User ★ 12k
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4
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4.2k
views
error in sort.int , 'x' must be atomic in affy::boxplot
affy package boxplot hgu133plus2 oligo package
updated 6.6 years ago by 63k • written 6.6 years ago by ▴ 840
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4
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Analysis of Affymetrix Human Gene 2.0 ST arrays
Annotation Normalization hgu133plus2 affy PROcess Category Annotation Normalization affy
updated 9.8 years ago by 63k • written 9.8 years ago by ★ 12k
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3
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Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
Annotation hgu133plus2 biomaRt Annotation hgu133plus2 biomaRt
updated 13.0 years ago by ★ 7.2k • written 13.0 years ago by ▴ 170
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How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf affymetrix microarrays hgu133plus2 affy
5.7 years ago rahil ▴ 30
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2.5k
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limma topTable annotation
GO hgu133plus2 affy limma convert Category GO hgu133plus2 affy limma convert Category
updated 12.6 years ago by ▴ 130 • written 12.6 years ago by 48k
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How to get ENTREZID from Gene symbol in bioconductor
hgu133plus2 hgu133plus2
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 600
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annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray Annotation hgu133a hgu133plus2 cdf Microarray Annotation hgu133a hgu133plus2
updated 9.8 years ago by ★ 3.9k • written 9.8 years ago by ▴ 10
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4
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2.4k
views
GEOquery loading error
hgu133plus2 GEOquery BiocInstaller hgu133plus2 GEOquery BiocInstaller
updated 11.4 years ago by ★ 8.2k • written 11.4 years ago by ★ 12k
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1
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views
Error while trying to use Genefilter
hgu133plus2 hgu133plus2
updated 14.0 years ago by ★ 2.0k • written 14.0 years ago by ▴ 200
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HUgene 2.0 analyses with CEL files, oligo package
microarray annotation hgu133plus2 hugene20
8.5 years ago kanacska ▴ 10
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3
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AFFX-BioB-3_at annotation
hgu133plus2 mouse4302 hgu133plus2 mouse4302
17.5 years ago Wu, Xiwei ▴ 350
4
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2
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2.3k
views
error with display of significant nodes using topGO
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 14.0 years ago by ▴ 400 • written 14.0 years ago by ▴ 340
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2
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2.2k
views
Duplicate probes
hgu133plus2 probe limma hgu133plus2 probe limma
updated 11.5 years ago by ★ 1.9k • written 11.5 years ago by ▴ 230
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5
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views
ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 7.5 years ago by ▴ 110 • written 11.4 years ago by ▴ 760
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5
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genefilter vs limma - many probes filtered
hgu133plus2 limma hgu133plus2 limma
updated 9.4 years ago by 48k • written 9.4 years ago by ★ 12k
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2
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views
How to convert probe sets to Gene symbols ?
affylmgui affymetrix microarrays hgu133plus2
updated 7.8 years ago by ▴ 360 • written 7.8 years ago by • 0
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3
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1.9k
views
BiocLite eror
Microarray hgu133plus2 Microarray hgu133plus2
updated 9.5 years ago by ★ 8.2k • written 9.5 years ago by ▴ 10
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4
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1.9k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.1 years ago by ▴ 500 • written 16.1 years ago by ★ 1.4k
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4
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1.9k
views
hgu133plus2cdf cant download
normalization hgu133plus2
6.0 years ago marion.ryan • 0
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2
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1.9k
views
HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO hgu133plus2 cdf affy limma
updated 9.0 years ago by 13k • written 9.0 years ago by ★ 12k
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2
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1.8k
views
Question about mget vs. select for annotation package
hgu133plus2 probe hgu133plus2 probe
updated 10.2 years ago by 16k • written 10.2 years ago by ▴ 40
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1
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1.8k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Transcription Annotation Normalization GO hgu133plus2 affy PROcess Category Transcription
updated 9.8 years ago by ▴ 80 • written 9.8 years ago by ▴ 20
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3
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1.7k
views
Affymetrix ReadAffy() can't read my CEL file
microarray affy cancer hgu133plus2 package
updated 8.6 years ago by 63k • written 8.6 years ago by ▴ 10
2
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1
reply
1.6k
views
topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 2.7 years ago by ▴ 20 • written 10.6 years ago by ▴ 340
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4
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1.6k
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hgu133plus2cdfSYMBOL not found
Cancer hgu133plus2 probe affy Cancer hgu133plus2 probe affy
updated 13.8 years ago by ▴ 630 • written 13.8 years ago by ▴ 60
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1
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1.6k
views
Bug in topGO-package [topGO_1.10.0: GenTable-function]
GO hgu133plus2 siggenes GO hgu133plus2 siggenes
updated 14.9 years ago by ▴ 400 • written 14.9 years ago by ▴ 330
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1.6k
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rtracklayer bug? cannot coerce type 'externalptr' to vector of type 'double' in browseGenome call
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
14.7 years ago Paul Shannon ★ 1.1k
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1.5k
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Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 10.2 years ago by ▴ 240 • written 10.2 years ago by 1.1k
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1.5k
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nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 10.2 years ago by 63k • written 10.2 years ago by ▴ 90
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3
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1.5k
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Can BioC still convert exprSet to ExpressionSet?
hgu133a hgu133plus2 mouse4302 convert hgu133a hgu133plus2 mouse4302 convert
updated 14.4 years ago by 25k • written 14.4 years ago by ▴ 100
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Unable to install hgu133plus2.db
hgu133plus2 hgu133plus2
9.9 years ago Guest User ★ 12k
0
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7
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1.5k
views
Missing GeneSymbol and Name information in TopTable
Annotation hgu133plus2 annaffy affylmGUI Annotation hgu133plus2 annaffy affylmGUI
updated 14.1 years ago by ★ 7.2k • written 14.1 years ago by ▴ 40
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7
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1.5k
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annaffy annotation problem (hgu133plus2)
Annotation hgu133plus2 probe annotate AnnBuilder Annotation hgu133plus2 probe annotate
updated 18.5 years ago by ▴ 170 • written 18.5 years ago by ▴ 430
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4
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1.5k
views
annotation package ?
Annotation hgu133plus2 Annotation hgu133plus2
updated 12.1 years ago by ★ 7.2k • written 12.1 years ago by ▴ 380
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1.5k
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QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
10.0 years ago b a ▴ 40
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6
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1.4k
views
outlier probes detection
hgu133plus2 hgu133plus2
updated 11.4 years ago by ▴ 210 • written 11.4 years ago by ▴ 240
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3
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1.4k
views
Problem with KEGGgraph
Organism hgu133plus2 KEGGgraph Organism hgu133plus2 KEGGgraph
updated 14.0 years ago by ▴ 570 • written 14.0 years ago by ▴ 270
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2
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1.4k
views
Package installation problem...
hgu133plus2 cdf hgu133plus2 cdf
updated 17.6 years ago by 63k • written 17.6 years ago by ▴ 10
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4
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1.4k
views
about columm "size" in out of hyperGtest ( Gostat package)
GO hgu133plus2 affy GO hgu133plus2 affy
updated 6.6 years ago by ▴ 10 • written 14.3 years ago by ▴ 430
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1
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1.4k
views
Problem in K- means clustering
hgu133plus2 graph hgu133plus2 graph
updated 9.1 years ago by ▴ 390 • written 9.1 years ago by ▴ 10
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2
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1.4k
views
Analysing microarray data in BioConductor-The Knowledgeblog
hgu133plus2 getSymbol error in unlist microarray
8.5 years ago • updated 6.9 years ago IOM ▴ 20
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2
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1.3k
views
inSilicoMerging and Limma
Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma
10.3 years ago Ed Siefker ▴ 230
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2
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1.3k
views
problem with 2.0 cdf
hgu133plus2 cdf hgu133plus2 cdf
updated 14.2 years ago by ▴ 450 • written 14.2 years ago by ▴ 420
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9
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1.3k
views
Appropriate Probe annotation for HT-HGU133A chips
hgu133a hgu133plus2 cdf probe hgu133a hgu133plus2 cdf probe
updated 14.4 years ago by 63k • written 14.4 years ago by ▴ 30
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6
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1.3k
views
load failed for 'Rlibstree'
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
updated 13.5 years ago by ★ 7.4k • written 13.5 years ago by ★ 1.1k
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1
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1.3k
views
Error in HyperGTest with GOHyperGParams class
Annotation GO hgu133a2 hgu133plus2 Annotation GO hgu133a2 hgu133plus2
updated 14.6 years ago by ▴ 20 • written 14.6 years ago by ▴ 510
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3
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1.2k
views
combining hgu133a and hgu133b
hgu133a hgu133b hgu133plus2 hgu133a hgu133b hgu133plus2
11.4 years ago Mayte Suarez-Farinas ▴ 510
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0
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1.2k
views
mget() error with NA values
Microarray Annotation hgu133plus2 hgu95av2 AnnotationDbi Microarray Annotation hgu133plus2
14.4 years ago James W. MacDonald 63k
50 results • Page 1 of 1
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Replies
Answer: Is SeqSQC compatible with hg38? by James W. MacDonald 63k
I'll answer your question with a question. Is there any reason to believe that things like IBD or PCA or Sex checks would be dependent on t…
Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of by Gregory • 0
Thanks for the prompt response, Gordon. I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …
Comment: DiffBind handling of replicates and consensus by Rory Stark ★ 5.0k
You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…
Comment: DiffBind: dba.plotProfile(profiles) by Rory Stark ★ 5.0k
Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…
Comment: DiffBind: dba.plotProfile(profiles) by Dorien ▴ 10
Not really an answer as I don't know really know why , but I also had the same issue and may have found a workaround ! If I set maxSites > …
Votes
Answer: How do I merge a list of GRanges?
Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
Comment: DiffBind: dba.plotProfile(profiles)
Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC
Comment: DiffBind: dba.plotProfile(profiles)
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