Showing : hgu133plus2 • reset
0
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annaffy annotation problem (hgu133plus2)
Annotation hgu133plus2 probe annotate AnnBuilder Annotation hgu133plus2 probe annotate
updated 19.1 years ago by ▴ 170 • written 19.1 years ago by ▴ 430
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4
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hgu133plus2cdf cant download
normalization hgu133plus2
6.6 years ago marion.ryan • 0
0
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5
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1.0k
views
Problems with homology packages
hgu133plus2 hgu133plus2
18.8 years ago Bosotti, Roberta [Nervianoms] ▴ 120
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5
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1.3k
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Annotation of Affymetrix hgu133plus2 chip
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 19.7 years ago by ★ 5.5k • written 19.7 years ago by ▴ 430
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4
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1.3k
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Problems with hgu133plus2
Annotation hgu133plus2 Annotation hgu133plus2
19.2 years ago Vitalina Komashko ▴ 30
0
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3
replies
2.1k
views
BiocLite eror
Microarray hgu133plus2 Microarray hgu133plus2
updated 10.1 years ago by ★ 8.2k • written 10.1 years ago by ▴ 10
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5
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1.4k
views
multiple locations for probeset in hgu133plus2CHRLOC vs. UCSC PSL data
Alignment Annotation hgu133plus2 Alignment Annotation hgu133plus2
updated 15.4 years ago by 16k • written 15.4 years ago by ▴ 10
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4
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1.2k
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hgu133plus2 GO issues
Annotation GO hgu133plus2 probe Annotation GO hgu133plus2 probe
updated 18.0 years ago by 65k • written 18.0 years ago by ▴ 320
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3
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3.5k
views
Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
Annotation hgu133plus2 biomaRt Annotation hgu133plus2 biomaRt
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 170
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3
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1.1k
views
equivalent probes between microarray platforms
hgu133plus2 hu6800 hgu133plus2 hu6800
updated 19.5 years ago by ▴ 10 • written 19.5 years ago by ▴ 140
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6
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1.6k
views
outlier probes detection
hgu133plus2 hgu133plus2
updated 12.0 years ago by ▴ 210 • written 12.0 years ago by ▴ 240
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9
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1.5k
views
Appropriate Probe annotation for HT-HGU133A chips
hgu133a hgu133plus2 cdf probe hgu133a hgu133plus2 cdf probe
updated 15.0 years ago by 65k • written 15.0 years ago by ▴ 30
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5
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ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.1 years ago by ▴ 110 • written 12.0 years ago by ▴ 760
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3
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1.1k
views
R crashes after image array plots hgu133plus2 in R2.6.0
GUI hgu133plus2 affy limma affylmGUI GUI hgu133plus2 affy limma affylmGUI
updated 16.5 years ago by 25k • written 16.5 years ago by ★ 2.0k
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votes
3
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1.2k
views
Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2 affy limma gcrma hgu133plus2 affy limma gcrma
15.8 years ago Boel Brynedal ▴ 200
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5
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2.2k
views
genefilter vs limma - many probes filtered
hgu133plus2 limma hgu133plus2 limma
updated 9.9 years ago by 50k • written 9.9 years ago by ★ 13k
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4
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1.7k
views
annotation package ?
Annotation hgu133plus2 Annotation hgu133plus2
updated 12.7 years ago by ★ 7.2k • written 12.7 years ago by ▴ 380
0
votes
3
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2.4k
views
HUgene 2.0 analyses with CEL files, oligo package
microarray annotation hgu133plus2 hugene20
9.1 years ago kanacska ▴ 10
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4
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1.3k
views
Question about hgu133plus2cdf?
hgu133plus2 cdf affy hgu133plus2 cdf affy
12.1 years ago Fabrice Tourre ▴ 970
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7
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1.2k
views
Affy chip annotation changes
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 13.5 years ago by 65k • written 13.5 years ago by ▴ 240
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2
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1.2k
views
Help interpreting many contrasts in one contrast versus many individual contrast matrices
hgu133plus2 hgu133plus2
updated 11.4 years ago by ★ 2.0k • written 11.4 years ago by 50k
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votes
2
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2.0k
views
HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO hgu133plus2 cdf affy limma
updated 9.6 years ago by ★ 13k • written 9.6 years ago by ★ 13k
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3
replies
970
views
KEGGHyperGParams variable "mouse4302PATH2EG" was not found
Annotation GO hgu133plus2 moe430b mouse4302 Annotation GO hgu133plus2 moe430b mouse4302
updated 15.0 years ago by ★ 7.2k • written 15.0 years ago by ▴ 170
5
votes
4
replies
3.2k
views
How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf affymetrix microarrays hgu133plus2 affy
6.3 years ago rahil ▴ 30
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votes
2
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2.4k
views
Duplicate probes
hgu133plus2 probe limma hgu133plus2 probe limma
updated 12.1 years ago by ★ 1.9k • written 12.1 years ago by ▴ 230
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4
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1.8k
views
hgu133plus2cdfSYMBOL not found
Cancer hgu133plus2 probe affy Cancer hgu133plus2 probe affy
updated 14.4 years ago by ▴ 630 • written 14.4 years ago by ▴ 60
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2
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1.5k
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Analysing microarray data in BioConductor-The Knowledgeblog
hgu133plus2 getSymbol error in unlist microarray
9.1 years ago • updated 7.5 years ago IOM ▴ 20
0
votes
7
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1.7k
views
Missing GeneSymbol and Name information in TopTable
Annotation hgu133plus2 annaffy affylmGUI Annotation hgu133plus2 annaffy affylmGUI
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 40
0
votes
7
replies
1.3k
views
Changes in annotations?
Annotation hgu133plus2 Biobase annotate Annotation hgu133plus2 Biobase annotate
14.8 years ago Alex Sanchez ▴ 90
0
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3
replies
2.5k
views
AFFX-BioB-3_at annotation
hgu133plus2 mouse4302 hgu133plus2 mouse4302
18.1 years ago Wu, Xiwei ▴ 350
0
votes
3
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1.1k
views
problem about hgu133plus2 annotation
hgu133plus2 hgu133plus2
updated 13.8 years ago by 65k • written 13.8 years ago by ▴ 10
0
votes
2
replies
989
views
vector allocation error
hgu133plus2 gcrma hgu133plus2 gcrma
updated 17.8 years ago by ▴ 60 • written 17.8 years ago by ▴ 50
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4
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2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.6 years ago by ▴ 500 • written 16.6 years ago by ★ 1.4k
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3
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1.7k
views
Can BioC still convert exprSet to ExpressionSet?
hgu133a hgu133plus2 mouse4302 convert hgu133a hgu133plus2 mouse4302 convert
updated 15.0 years ago by 25k • written 15.0 years ago by ▴ 100
0
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2
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1.1k
views
limma power question
hgu133plus2 limma hgu133plus2 limma
updated 19.5 years ago by 50k • written 19.5 years ago by ▴ 500
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4
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1.5k
views
about columm "size" in out of hyperGtest ( Gostat package)
GO hgu133plus2 affy GO hgu133plus2 affy
updated 7.2 years ago by ▴ 10 • written 14.9 years ago by ▴ 430
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2
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1.5k
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problem with 2.0 cdf
hgu133plus2 cdf hgu133plus2 cdf
updated 14.8 years ago by ▴ 450 • written 14.8 years ago by ▴ 420
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2
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1.1k
views
biomart doesn't annotate all the genes queried -CEACAM6
Cancer hgu133plus2 annotate affy biomaRt Cancer hgu133plus2 annotate affy biomaRt
15.6 years ago Julian Lee ▴ 140
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4
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1.1k
views
Affy output
Annotation GO hgu133a2 hgu133plus2 cdf Annotation GO hgu133a2 hgu133plus2 cdf
14.9 years ago Sarmah, Chintanu Kumar ▴ 70
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2
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1.1k
views
Questions about gene identifiers and probesets regulation
Microarray hgu133plus2 limma Microarray hgu133plus2 limma
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 40
0
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2
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1.1k
views
RMA of CEL files from different chip types
hgu133a hgu133plus2 hgu133a hgu133plus2
updated 16.6 years ago by ▴ 190 • written 16.6 years ago by ▴ 10
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votes
2
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953
views
annotation
hgu133plus2 mgu74av2 annotate hgu133plus2 mgu74av2 annotate
updated 18.1 years ago by ▴ 300 • written 18.1 years ago by ▴ 320
0
votes
2
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1.5k
views
Package installation problem...
hgu133plus2 cdf hgu133plus2 cdf
updated 18.1 years ago by 65k • written 18.1 years ago by ▴ 10
0
votes
1
reply
764
views
annotation hgu133plus2 problem,
hgu133plus2 hgu133plus2
updated 18.2 years ago by 65k • written 18.2 years ago by ▴ 360
0
votes
1
reply
1.0k
views
Annotation for Mouse 430 2.0 and Human Genome U133 Plus 2.0 Arrays
hgu133plus2 hgu133plus2
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 140
0
votes
2
replies
711
views
adding annotation to exprSet
Annotation hgu133plus2 annotate affy limma Annotation hgu133plus2 annotate affy limma
18.7 years ago Andreas Zankl ▴ 80
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4
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1.3k
views
possible bug in getBM{biomaRt}
hgu133plus2 hgu133plus2
updated 15.1 years ago by ▴ 660 • written 15.1 years ago by ▴ 30
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1
reply
1.2k
views
error with affycomp package
hgu133plus2 affycomp hgu133plus2 affycomp
updated 12.0 years ago by 65k • written 12.0 years ago by ▴ 240
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2
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1.2k
views
PieGlyph - labels do not show
hgu133plus2 Rgraphviz hgu133plus2 Rgraphviz
15.0 years ago Sim, Fraser ▴ 350
1
vote
3
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1.3k
views
how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation hgu133a hgu133plus2 probe Annotation hgu133a hgu133plus2 probe
updated 15.0 years ago by ★ 6.5k • written 15.0 years ago by ▴ 350
50 results • Page 1 of 1
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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